Sphingomonas sp. NIBR02145: O3305_11190
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Entry
O3305_11190 CDS
T10953
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3305_11190 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spnb03019
]
O3305_11190 (rnr)
03016 Transfer RNA biogenesis [BR:
spnb03016
]
O3305_11190 (rnr)
Enzymes [BR:
spnb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O3305_11190 (rnr)
Messenger RNA biogenesis [BR:
spnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O3305_11190 (rnr)
Transfer RNA biogenesis [BR:
spnb03016
]
Prokaryotic type
tRNA degradation factors
O3305_11190 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WHU00786
LinkDB
All DBs
Position
complement(2555422..2557662)
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AA seq
746 aa
AA seq
DB search
MAKPKHKAGLPTRQQILDFITNSNTPAGKREIAKAFGLHGQDKILLKALLKDMSDEGLID
VAPGRAFHKMGGVPKVTVLRITDADGDTTWAVPERWEAEGVPVPRLRVREPRGKRSALAI
GDRILARTEEAGNGWIAHPMKKLARGEELMLGVLKEEAGRLWLQGVEKKERRNWMVSDAG
GGEVGDLVLAEKTGRPPRITAKVVEILGDPFAPRSFSLIAIHRHGIPNVFSEDLLEEAER
VSKLDLGKREDLRHLPIVAIDPADARDHDDAVWAAPDEDPKNEGGWKAVVAIADVSFYVR
PGSELDREARKRGNSVYFPDRVVPMLPEILSAEVCSLKEGEDRAALACHLQIGKHGELKS
WRFTRAVVSIAANIAYEDAQAAIDGKIEHPLTETALRPLWSCWHALNKARDKREPLDLDL
PERRIVLDEMGRILSVAPRERLDAHKLIEDYMIAANVAAAKALEAKKAPVMYRIHEPPAR
EKLVALREYLKTFGIEFALGQVIKPATFNHILKRVGESDFREQVMQQVLRSQMQASYGPA
NHGHFGLSLGSYAHFTSPIRRYADLIVHRSLVHAYDLGPGGLTQEEAATMERIGESISSL
ERRAMEAERETIDRYVAAYLANHVGEVLEARITGVQSFGFFATVDGVGGDGLVAARDLGT
EYFRHDEAGQRLVGDESGDEFTLGMRLQLRLVEANPVSGALRFELPDGVGSAGPSGFRPE
RAGKGRPRPIKRRGRPANIRHNGKRR
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaccaaaacataaagctggactgcccacgcggcagcagattctggatttcatc
accaattccaacacgcccgcaggcaagcgcgaaatcgccaaggccttcggactgcacggg
caggacaagatcctgctcaaggcgctgctcaaggacatgagcgacgaggggctgatcgac
gtcgccccgggccgcgccttccacaagatgggcggcgtgcccaaggtcaccgtgctgcga
atcaccgacgcggatggcgacaccacctgggcggtgcccgagcgctgggaggccgagggc
gtgccggtgccgcggctgcgggttcgcgagccgcgcggcaagcgctcggcgctggcgatc
ggcgaccgcatccttgcccgcaccgaagaggccggcaacggctggatcgcccatccgatg
aagaagctcgcgcgcggcgaggagctgatgctgggcgtgctcaaggaagaggccgggcgg
ctctggctgcagggcgtcgagaagaaggagcggcgcaactggatggtctccgacgccggc
ggcggcgaagtcggcgacctggtgctggccgaaaagaccggccgcccgccgcggatcact
gccaaggtggtcgagattctcggcgatcccttcgccccgcgcagcttctcgctgatcgcg
atccaccggcatggcatccccaatgtcttctcggaggacctgctcgaagaggccgagcgg
gtgtcgaagctcgacctcggcaagcgcgaggaccttcgccatctgccgatcgtcgccatc
gacccggcggatgcccgcgaccatgacgacgcggtctgggccgcgccggacgaggatccg
aagaatgaaggcggctggaaggccgtggtcgcgatcgccgatgtatccttctatgtccgc
cccggttcggagctggaccgcgaggcgcgcaagcggggcaactcggtctattttcccgac
cgcgtcgtgccgatgctgcccgagatcctctcggccgaggtctgctcgctcaaggaaggc
gaggaccgggcggcgctcgcctgccatctccagatcggcaagcatggcgagctgaaaagc
tggcgcttcacgcgcgccgtggtcagcatcgcggcaaacatcgcctatgaggatgcccag
gccgccatcgacggcaagatcgagcatccgctcaccgaaacggcgctcaggccactctgg
agctgctggcatgcgctcaacaaggcgcgcgacaagcgcgagccgctcgacctcgacctg
ccggagcgccgcatcgtcctcgacgagatggggcgtatcctctcggttgctccgcgcgag
cggctggatgcgcacaagctgatcgaggattacatgatcgcggccaatgtcgcggcggcc
aaggcgctggaggcgaagaaggcgccggtgatgtatcgcatccacgagccgccggcccgg
gagaagctcgtcgcgctgcgggaatatctcaagaccttcggcatcgagttcgcactgggg
caggtcatcaagccggcgacgttcaaccatatcctgaagcgggttggggagagcgacttt
cgcgagcaggtgatgcagcaggtgctgcgcagccagatgcaggcctcgtatggcccggcg
aaccacggccatttcggcctgtcgctcggcagctatgcgcacttcacttcgccgatccgc
cgctatgccgacctgatcgtccaccgctcgctggtccatgcctatgatctcggcccgggc
gggctgacgcaggaagaagccgcgacgatggagcggatcggcgagagcatctcgagcctc
gagcgccgggcaatggaagcggagcgggagacgatcgaccgttatgtcgccgcctatctc
gccaatcatgtcggcgaggtgctggaggcacggatcaccggagtgcagagcttcggcttc
ttcgccaccgtcgatggcgtcggcggcgacgggctggtcgcggcacgggacctcggcacc
gaatatttccggcacgacgaagccggacagcggctggtcggcgacgagagcggcgacgag
ttcaccctcggcatgcggctgcagctgcggctggtcgaggcgaacccggtatcgggcgcg
ctgcgcttcgagctgccggacggcgtcggttcggccggtccttcgggcttccggccggaa
cgggctggcaaagggcggccgcgcccgattaagaggcggggcagaccggccaatattcgc
cacaatgggaagcggcgctga
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