Sphingomonas sp. NIBR02145: O3305_12725
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Entry
O3305_12725 CDS
T10953
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3305_12725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spnb03019
]
O3305_12725
Enzymes [BR:
spnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O3305_12725
Messenger RNA biogenesis [BR:
spnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O3305_12725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6362
Motif
Other DBs
NCBI-ProteinID:
WHU01076
LinkDB
All DBs
Position
2874651..2876177
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AA seq
508 aa
AA seq
DB search
MQFNELGLSETVLAALAAKGYSEATPIQAKSIPSLLEGRDLLGIAQTGTGKTAAFMLPSI
DRLVASGKRAQPRGCRMLVLAPTRELASQIADQARHYSKGTRLSVATIFGGTSIHKNKTD
LAKGVDILVATPGRLVDLMDQCYAILMGLEIFVLDEADQMMDLGFIHALKRIVRELPAKR
QSLFFSATMPKTIRELAGQFIKEPVEVKVTPEATTAERVDQSVTFVQQAEKQALLTMMLR
DTEIDRALVFTRTKHGADRVVRLLAGNGIAANAIHGNKSQPQRERALGEFRAGKVKILVA
TDIAARGIDVSGVSHVFNFELPNVADQYVHRIGRTARAGNDGEAISFCADDERPYLRDIE
RLIRQKLSVVPLPEGFVAAAEKIKTSRVNVAPSRDEQNGRNGRAMQRDGRRPGGPPQRGR
PGGQRDDRARGDQPRRDGHAPRPEAAGAAAGEPRPRRFDAQPQGEQPRNYARPKRKWQPR
PTGSGGSQRQGSQGGGGRQGGQGGNRGR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcaatgaactcggtctctcggagaccgttctcgccgcgcttgccgccaagggc
tatagcgaggcgacgccgatccaggccaagtcgatcccgtcgctgctcgaagggcgcgac
ctgctcggcatcgcccagaccggcaccggcaagaccgccgctttcatgcttccctcgatc
gaccgtctggtcgccagcggcaagcgcgcccagccgcgcggctgccgcatgctcgtgctc
gcccccacccgcgagctcgccagccagatcgccgaccaggcccgccattattcgaagggc
acgcgactgagcgtcgccaccatcttcggcggcacttcgatccacaagaacaagaccgac
ctcgccaagggcgtcgacatccttgtcgccaccccgggccgcctcgtcgatctgatggac
cagtgctacgcgatcctgatgggcctcgagatcttcgtgctcgacgaagccgatcagatg
atggacctcggcttcatccacgcgctcaagcgcatcgtccgcgagctgcccgccaagcgg
cagtcgctgttcttctcggcgaccatgccgaagacgatccgcgagctcgccggccagttc
atcaaggaaccggtcgaagtgaaggtcacccccgaggcgaccaccgccgagcgcgtcgac
cagagcgtgacctttgtccagcaggcggagaagcaggcgctgctcaccatgatgctgcgc
gataccgagatcgatcgcgcgctggtgttcacccgcaccaagcacggcgccgaccgcgtc
gtccgtctgctcgcgggcaacggcatcgccgccaacgcgatccatggcaacaagagccag
ccgcagcgcgagcgcgcgctcggcgagttccgcgccggcaaggtgaagatcctggtcgcc
accgacatcgccgcgcgcggcatcgacgtgtcgggcgtcagccacgtcttcaacttcgag
ctgccgaacgtggcggaccagtatgtccaccgcatcggccgcaccgcgcgcgccggcaat
gacggcgaggcgatcagcttctgcgccgatgacgagcgcccctatctgcgcgacatcgag
cggctgatccgccagaagctcagcgtcgtgccgctgcccgagggcttcgtcgccgccgcc
gagaagatcaagaccagccgcgtcaatgtcgcgcccagccgcgacgagcagaatggccgc
aacggtcgcgcgatgcagcgcgacggtcgccgtccgggtggcccgccgcagcgcggtcgc
cccggtggccagcgtgacgatcgcgcacgtggcgaccagccgcgccgcgacggccatgcc
ccgcgtccggaagccgccggcgccgccgcaggcgagccgcgtccgcgccgcttcgacgcg
cagccgcagggcgagcagccccgcaactatgcccgtcccaagcgcaagtggcagccccgc
ccgaccggtagcggcggcagccagcgccagggtagccagggcggcggtggccgtcagggc
ggccagggcggcaatcgcgggcgctga
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