Sphingomonas sp. NIBR02145: O3305_15615
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Entry
O3305_15615 CDS
T10953
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
O3305_15615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spnb03019
]
O3305_15615
03009 Ribosome biogenesis [BR:
spnb03009
]
O3305_15615
04131 Membrane trafficking [BR:
spnb04131
]
O3305_15615
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spnb04147
]
O3305_15615
Messenger RNA biogenesis [BR:
spnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
O3305_15615
Ribosome biogenesis [BR:
spnb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
O3305_15615
Membrane trafficking [BR:
spnb04131
]
SNARE
SNARE associated proteins
Others
O3305_15615
Autophagy
Aggrephagy
Other aggrephagy associated proteins
O3305_15615
Exosome [BR:
spnb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
O3305_15615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_5
AAA_33
CDC48_2
AAA_2
AAA_14
TIP49
IstB_IS21
AAA_28
nSTAND3
NPHP3_N
RNA_helicase
AAA_18
AAA_7
Mg_chelatase
DUF815
AAA_24
AAA_lid_PRS2_C
AAA_30
Zeta_toxin
AAA_11
Sigma54_activat
AAA_17
TsaE
ABC_tran
AAA_3
Parvo_NS1
AAA_25
NB-ARC
SLFN-g3_helicase
bpMoxR
PhoH
ATPase
Viral_helicase1
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
WHU01617
LinkDB
All DBs
Position
3457481..3459775
Genome browser
AA seq
764 aa
AA seq
DB search
MADEEAQPIKLQVANARPEDSGRGLAHLPRALMARLGLTEGDVIEIVGKRATPALAVLPY
AEDEGLEILRIDGLQRANAGVGSGDFVEVRKAVSKPATRVVFAPAQQNLRLQGSGEALKR
VFFQRPLAQGDVVNTNAQQRADIPPQVAQFLRAPAYALQEIRLNVVSASPKGIVHIDENT
DVELRPEYEEVGGDGRRADVTYDDIGGMAGTIDQLREMVELPLRYPELFQRLGVDPPKGV
LLHGPPGTGKTRLARAVANESDAQFFLINGPEIMGSAYGESEGRLRQIFEEAAKAAPSIV
FIDEIDSIAPKRGQVSGEAEKRLVAQLLTLMDGLEARANIVVIAATNRPDAIDEALRRPG
RFDREIVVGVPDERGRREILGIHTRGMPLGDKVDLGELARTTFGFVGADLSALAREAAIE
AVRRIMPKLDLEKGTIPPEVLDTLAVTREDFLEALKRVQPSAMREVMVEAPRVRWEDVGG
LDDAQMRLKEGVELPLRDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAEANFIA
TKSSDLLSKWYGESEQQIARLFARARQVAPCVIFIDELDSLVPARGGGLGEPQATERVVN
TILSEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELIYVGVPDAAGRERILRIQTE
KMPLAGDVDLKAIAEQTERYTGADLEDVVRRAGLVALRQSLQTKEVTQAHFDEALADSRA
TVTPEMENEYQAMSGRLKQQASAIQPLGFIAPGMLQGRGPKGAD
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagaagcgcagccgatcaagctgcaagttgccaatgcccggcccgaggac
agcggccgtggcctcgcgcatctgccgcgcgccctgatggcgcggctcggcctcaccgaa
ggcgatgtgatcgagatcgtcggcaagcgcgccaccccggcgcttgccgtgctgccctat
gccgaggacgagggcctcgagatcctgcgcatcgacggcctccagcgcgccaatgccggt
gtcggctcgggcgatttcgtcgaggtgcgcaaggcggtgtccaagcccgcgactcgcgtg
gtgttcgcgcctgcccagcagaatctccgcctccagggcagcggcgaggcgctcaagcgc
gtcttcttccagcgcccgctggcccagggcgatgtcgtcaacacgaacgcccagcagcgc
gcggacatcccgccccaggtcgcccagttcctccgcgcgcccgcctatgcgctgcaggag
attcgcctcaacgtcgtctcggccagccccaagggcatcgtccatatcgacgagaatacc
gatgtcgagctgcgccccgaatatgaggaggtcggcggcgacggccgccgcgccgacgtc
acctatgacgatatcggcggcatggccggcacgatcgaccagctccgcgagatggtcgag
cttcccttgcgctatcccgagctcttccagcgcctgggcgtcgatccgcccaagggcgtg
ctcctccatggcccgcccggcaccggcaagacgcggctcgcccgcgccgtcgccaacgag
tcggacgcgcagttcttcctgatcaacgggcccgagatcatgggctcggcctatggcgaa
tcggaggggcgcctgcgccagatcttcgaggaagcggccaaggcggcgccgtcgatcgtc
ttcatcgacgagatcgattcgatcgcgcccaagcgcggccaggtttcgggcgaggcggag
aagcgcctcgtcgcccagctgctcacgctgatggacgggctcgaggcgcgcgccaacatc
gtcgtcatcgccgcgaccaatcgccccgatgcgatcgacgaggcgctgcgccggccgggc
cggttcgaccgcgagatcgtcgtcggcgtgccggacgagcggggccgccgcgagattctc
ggcatccacacccgcggcatgccgctcggcgacaaggtcgatctcggcgagctcgcccgc
accaccttcggctttgtcggcgccgacctgtcggcgctcgcccgcgaggcggcgattgag
gcggtgcgccggatcatgccgaagctcgacctagagaagggcacgattccgcccgaggtg
ctcgatacccttgccgtcacccgcgaggacttcctcgaggcgctcaagcgcgtccagcct
tcggcgatgcgcgaagtgatggtcgaggcgccgcgcgtccgctgggaggatgtcggcggg
ctcgacgatgcccagatgcggctcaaggaaggcgtcgagctgcccttgagggatcccgac
gcgttccgccgcctcggcatccgcccggccaagggcttcctgctctatggccctccgggt
accggcaagaccctgctcgccaaggccgtcgcgcgcgaggcggaggcgaacttcatcgcc
accaagtcgagcgacctgctcagcaaatggtatggcgaatcggagcagcagattgcgcgc
ctgttcgcccgtgcccgccaggtcgcgccctgcgtgatcttcatcgacgaactcgattcg
ctggtgccggcgcgtggcggcggcctgggcgagccccaggcgaccgagcgcgtggtcaat
acgattctgtccgagatggacgggctcgaggagctgcagtctgtggtggtgatcggggcg
accaaccggccgaacctgatcgacccggcgctgctgcgtcccggacggttcgacgagctg
atctatgtcggcgtgcccgatgctgccggacgggaaaggatcctgcgcatccagaccgag
aagatgccgctcgccggcgacgtcgatctcaaggcgatcgccgagcagaccgagcgctat
accggtgctgatctggaggatgtggtccgccgcgccggcctggtcgcgctgcgccagtcg
ctccagaccaaggaagtgacgcaggcgcatttcgacgaggcactcgccgattcgcgcgcc
acggtcacgcccgagatggagaatgagtaccaggcgatgtcgggccggctgaagcagcag
gcctcggcgatccagccgctggggttcatcgctcccggcatgctccagggccgcggcccg
aagggtgcggactga
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