Sphingomonas sp. NIBR02145: O3305_16775
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Entry
O3305_16775 CDS
T10953
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3305_16775 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spnb03019
]
O3305_16775 (pnp)
03016 Transfer RNA biogenesis [BR:
spnb03016
]
O3305_16775 (pnp)
Enzymes [BR:
spnb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
O3305_16775 (pnp)
Messenger RNA biogenesis [BR:
spnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
O3305_16775 (pnp)
Transfer RNA biogenesis [BR:
spnb03016
]
Prokaryotic type
tRNA degradation factors
O3305_16775 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
BioW
Motif
Other DBs
NCBI-ProteinID:
WHU01834
LinkDB
All DBs
Position
3696614..3698959
Genome browser
AA seq
781 aa
AA seq
DB search
MFDKKTVSIEWGGKTLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGENEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDEQVAAGDLDLVVA
ATYDAVMMVESEAKELSEEIMLGAVLFAHDACREVVKAIIKLAEQAAKDPWEIASSNDNA
KLKDSIKKLVGKDIAAAYKLTDKSARSNALNEARAKAKAKFAEDGLSPQEVMAGIKLTKK
LEAEIVRTAILKDGKRIDGRTTTQIRPIEAETHFLPRAHGSALFTRGETQTIATATLGTK
DAEQMIDGLGGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKE
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALNQAKDGRAHILGEMNK
ALSATRSELSAHAPRIETFTIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKVSS
SDVSQIEAAINWIKGIVEEAEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVSDALSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGDR
GDRRRDGGRGGDRGPRREGGDRDRGPRGDRGDRGPRRERSESKDEGGEDIGLPAFLTGAD
D
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaagaagactgtatcgatcgagtggggcggcaagacgctgactctcgaaacg
ggcaaggttgcccgccaggctgacggcgccgtgatggcgaccctcggcgaaaccgtggtt
ctctgcgcggtgaccgccgccaagagcgtgaaggaaggccaggacttcttcccgctgacc
gtccactaccaggaaaagttctcggccgccggccgtatcccgggtggcttcttcaagcgt
gagcgtggcgccaccgagaaggagactttggtctcgcgtctcatcgaccgcccgatccgc
ccgctgttcccggaaggcttctacaacgagatcaacgccatcgctcaggtgctgagctat
gacggcgagaacgagccggacatcctcgcgatggtcgccgcttcggcagcgctcaccatc
tcgggcgtgccgttcatgggcccgatcggcgccgcgcgcgtcggctatgtcgatggcgag
tacatcctgaacccgaccgacgagcaggtcgccgccggcgatctcgatctcgtcgtcgcc
gctacctatgacgcggtgatgatggtcgaatcggaagccaaggagctttcggaagagatc
atgctcggtgccgtgctgttcgcgcacgatgcgtgccgcgaagtcgtcaaggcgatcatc
aagctcgccgagcaggccgccaaggatccctgggaaatcgcgtcgtcgaacgacaacgcc
aagctcaaggactcgatcaagaagctggtcggcaaggacatcgcggccgcctacaagctg
accgacaagtcggcccgctcgaacgccctcaacgaggcgcgtgcgaaggcgaaggcgaag
ttcgctgaggacggcctctcgccccaggaagtcatggccggcatcaagctgaccaagaag
ctggaagccgagatcgtccgcaccgccatcctcaaggacggcaagcgcatcgacggccgc
accaccacgcagatccgcccgatcgaggcggagacgcatttcctcccgcgtgcgcacggc
tcggccctgttcacccgcggcgagacccagaccatcgccaccgcgaccctgggcaccaag
gacgccgagcagatgatcgacggcctgggtggcctgtcgtaccagaacttcatgctgcac
tataacttcccgccctattcggtcggcgaagtgggccgcttcggtgccccgggccgccgc
gaagtcggtcacggcaagctcgcctggcgcgcgctgcacccggtgctgccgaccaaggaa
gagttcccctacacgatccgcctgaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtctgcggcggcagcctcgcgatgatggacgccggcgtgccgatcaagcgt
ccggtctcgggcatcgccatgggcctgatcctcgagggcaaggacttcgcgatcctgtcg
gacatcctgggtgacgaagatcacctcggcgacatggacttcaaggtggcgggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgccggcatcaccaaggagatcttc
gaagccgcgctgaaccaggccaaggacggtcgcgcccacatcctgggcgagatgaacaag
gcgctgtcggcaacccgttcggagctctcggcgcacgcaccgcgcatcgagaccttcacg
atcgacaagtcgaagatccgtgacgtgatcggcaccggcggcaaggtgatccgcgagatc
gtcgccaccaccggcgccaaggtcgacatcgacgacgagggcgtgatcaaggtttcgtcg
agcgacgtctcgcagatcgaagccgcgatcaactggatcaagggcatcgtcgaagaggcg
gaagtcggcaagatctacaccggcaaggtcgtcaacctcgtcgatttcggcgccttcgtg
aacttcatgggcggcaaggacggtctcgtccacgtctcggagatcaagaacgagcgcgtc
gagaaggtctcggacgccctgtcggaaggccaggaagtcaaggtcaaggtcctcgagatc
gatccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgaccaggagaccggcgaagag
ctggaagacacccgtccggcccgcgaaccgcgcgagccgcgcggtgatcgtggcgaccgc
ggtgaccgtcgtcgcgacggtggccgtggcggcgatcgtggtccgcgtcgcgaaggcggc
gaccgggatcgcggtccgcgcggtgaccggggcgatcgcggcccgcgccgcgagcgctcg
gagtcgaaggacgaaggcggcgaggacatcggcctgccggcgttcctcaccggcgccgac
gactga
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