KEGG   Sphingomonas sp. NIBR02145: O3305_17925
Entry
O3305_17925       CDS       T10953                                 
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase flavoprotein subunit
  KO
K00239  succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
Organism
spnb  Sphingomonas sp. NIBR02145
Pathway
spnb00020  Citrate cycle (TCA cycle)
spnb00190  Oxidative phosphorylation
spnb00650  Butanoate metabolism
spnb00720  Other carbon fixation pathways
spnb01100  Metabolic pathways
spnb01110  Biosynthesis of secondary metabolites
spnb01120  Microbial metabolism in diverse environments
spnb01200  Carbon metabolism
Module
spnb_M00009  Citrate cycle (TCA cycle, Krebs cycle)
spnb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
spnb_M00149  Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:spnb00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00020 Citrate cycle (TCA cycle)
    O3305_17925 (sdhA)
   00650 Butanoate metabolism
    O3305_17925 (sdhA)
  09102 Energy metabolism
   00190 Oxidative phosphorylation
    O3305_17925 (sdhA)
   00720 Other carbon fixation pathways
    O3305_17925 (sdhA)
Enzymes [BR:spnb01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.5  With a quinone or related compound as acceptor
    1.3.5.1  succinate dehydrogenase
     O3305_17925 (sdhA)
SSDB
Motif
Pfam: FAD_binding_2 Succ_DH_flav_C GIDA DAO Pyr_redox_2 Thi4 S-Me-THD_N FAD_oxidored
Other DBs
NCBI-ProteinID: WHU05230
LinkDB
Position
complement(3947994..3949796)
AA seq 600 aa
MMSAYKIIDHTYDAVVVGAGGSGLRATMGCAEAGLKTACITKVFPTRSHTVAAQGGIAAS
LGNNTPDHWSWHMFDTVKGSDWLGDQDAIEYMVREAPAAVYELEHAGVPFSRNDNGTIYQ
RPFGGHMQNMGEGPPVQRTCAAADRTGHAMLHALYQQSLKYDADFYVEYFALDLIMEDGA
CRGVIALCMEDGSIHRFRSHAVVLATGGGGRVYQSATSAHTCTGDGNGMALRAGIALQDM
EFVQFHPTGIYGAGVLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVARSMAME
IREGRGVGKEKDHIFLHLNHIDPKILHERLPGITETGKIFAGVDLTRQPLPVVPTVHYNM
GGIPTNYHGEVVRNKDGDPDSVVPGLFAVGEAACVSVHGANRLGSNSLIDLVVFGRATGL
RLKELLKPGMKHNELPKGSEEFALGRLDHFRNAKGEKPTAQIRADMQKTMQRHCAVFRDS
ALLAEGVEHMKEVYKGFQDVGIQDRSLIWNTDLVETLELDNLIGQAVVTIECAANRKESR
GAHMHEDFPERDDKNWMKHTVATFEGWGGKGGATTIDYRPVHDYTLTDEIEYIKPKKRVY
NT seq 1803 nt   +upstreamnt  +downstreamnt
ctgatgtccgcctacaagatcatcgaccacacctatgatgccgtcgtcgtcggcgccggc
ggttcgggcctgcgcgccaccatgggctgcgccgaggccgggttgaagaccgcctgcatc
accaaggtgttccccacccgctcgcacaccgtcgccgcccagggcggcatcgcggcgagc
ctcggcaacaacacgcccgatcactggtcgtggcacatgttcgacaccgtcaagggctcc
gactggctcggcgaccaggacgcgatcgagtacatggtccgcgaggctccggctgcggtc
tatgagctcgagcatgccggcgtgccgttcagccgcaacgacaatggcacgatctaccag
cgcccgttcggcggccacatgcagaacatgggcgaaggcccgcccgtgcagcgcacctgc
gccgcggcggaccgtaccggccacgccatgctccacgcgctctaccagcagagcctgaag
tatgacgccgacttctacgtcgaatatttcgcgctcgacctgatcatggaagatggcgcc
tgccgcggcgtgatcgccttgtgcatggaagacggctcgatccaccgcttccgttcgcat
gccgtggtgctcgccaccggcggcggcggccgcgtctaccagtcggcgacctcggcgcac
acctgcaccggcgacggcaacggcatggcgctgcgcgcgggcatcgcgctgcaggacatg
gagttcgtccagttccacccgaccggcatctacggcgccggcgtcctcatcaccgagggc
gcacgcggtgaaggcggctacctgaccaactccgagggcgagcgcttcatggagcgctat
gccccgtcggccaaggaccttgccagccgcgacgtcgtcgcgcgctcgatggcgatggaa
atccgcgagggccgcggcgtcggcaaggagaaggatcacatcttccttcacctcaaccat
atcgatccgaagatcctgcacgagcgcctgccgggcatcaccgagaccggcaagatcttc
gccggcgtcgacctgacccgccagccgctgccggtggtgccgaccgtccactataatatg
ggcggcatccccacgaactatcacggcgaagtcgtccgcaataaggacggcgatccggac
tcggtcgtccccggcctgttcgcggtcggcgaagcggcctgcgtgtcggtccacggcgcc
aaccgcctcggctccaactcgctgatcgacctcgtcgtgttcggtcgcgccaccggtctc
cgcctcaaggagctgctcaagcccggcatgaagcacaacgagcttcccaagggttcggag
gagttcgcgctcggccgcctcgatcacttccgcaacgccaagggcgaaaagcccaccgcg
cagatccgcgccgacatgcagaagacgatgcagcgccactgcgccgtgttccgcgacagc
gcgctgctggcggaaggcgtcgagcacatgaaggaagtctataagggcttccaggatgtg
ggcatccaggaccgctcgctgatctggaacaccgacctggtcgagacgcttgagctcgac
aacctgatcggccaggccgtcgtcaccatcgagtgcgccgccaaccgcaaggaaagccgc
ggcgcgcacatgcacgaggacttccccgagcgcgacgacaagaactggatgaagcacacc
gtcgccaccttcgagggctggggcggcaagggcggcgcgacgaccatcgattaccgcccg
gtccacgactacacgctcaccgacgagatcgagtacatcaagccgaagaagcgggtgtac
tga

KEGG   Sphingomonas sp. NIBR02145: O3305_17905
Entry
O3305_17905       CDS       T10953                                 
Name
(GenBank) succinate dehydrogenase iron-sulfur subunit
  KO
K00240  succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
Organism
spnb  Sphingomonas sp. NIBR02145
Pathway
spnb00020  Citrate cycle (TCA cycle)
spnb00190  Oxidative phosphorylation
spnb00650  Butanoate metabolism
spnb00720  Other carbon fixation pathways
spnb01100  Metabolic pathways
spnb01110  Biosynthesis of secondary metabolites
spnb01120  Microbial metabolism in diverse environments
spnb01200  Carbon metabolism
Module
spnb_M00009  Citrate cycle (TCA cycle, Krebs cycle)
spnb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
spnb_M00149  Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:spnb00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00020 Citrate cycle (TCA cycle)
    O3305_17905
   00650 Butanoate metabolism
    O3305_17905
  09102 Energy metabolism
   00190 Oxidative phosphorylation
    O3305_17905
   00720 Other carbon fixation pathways
    O3305_17905
Enzymes [BR:spnb01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.5  With a quinone or related compound as acceptor
    1.3.5.1  succinate dehydrogenase
     O3305_17905
SSDB
Motif
Pfam: Fer2_3 Fer4_17 Fer4_8 Fer4_10 Fer2 Fer4_7 Fer4_9
Other DBs
NCBI-ProteinID: WHU02046
LinkDB
Position
complement(3944433..3945218)
AA seq 261 aa
MAEFRLPKNSRISTKGKEHKADPGAKNVKKFKIYRYDPDSGENPRYDTFEIDLDECGPMV
LDALIKIKSEQDSSLTFRRSCREGICGSCSMNMDGRNGLACTTAIEDIKGDIRITPLPHM
DVIKDLVPDFTHFYAQYASIKPWLQTVSTTPSGKERLQSPADREKLDGLYECILCACCST
SCPSYWWNSDKFLGPAILLQAYRWLADSRDEMTGERLDNLEDPFRLYRCHTIMNCSNVCP
KGLSPGKAIAEIKKMEAERTL
NT seq 786 nt   +upstreamnt  +downstreamnt
atggccgaattccgccttcccaagaacagccgcatctccaccaagggcaaggagcacaag
gcggacccgggcgcgaagaacgtcaagaagttcaagatctaccgctacgatccggattcg
ggcgagaatccgcgctacgacacgttcgagatcgacctcgacgaatgcggcccgatggtc
ctcgacgcgctcatcaagatcaagtcggagcaggacagctcgctgaccttccgccgctcg
tgccgcgaaggcatttgcggctcgtgctcgatgaacatggacgggcgcaacggcctcgcc
tgcaccaccgcgatcgaggacatcaagggcgacatccgcatcaccccgctgccgcacatg
gacgtgatcaaggatctcgtccctgacttcacccacttctatgcgcagtacgcctcgatc
aagccgtggctgcagaccgtgtcgaccacgccctcgggcaaggagcgcctccagtcgccg
gccgaccgcgagaagctcgacggcctgtacgagtgcatcctgtgcgcctgctgctcgacc
tcgtgcccgagctactggtggaacagcgacaagtttctcggtccggcgatcctgctccag
gcctatcgctggctggccgactcgcgcgacgagatgaccggcgagcgcctcgacaatctc
gaggatccgttccgcctctatcgctgccacacgatcatgaactgctcgaacgtctgcccg
aagggcctgagcccgggcaaggcgatcgccgagatcaagaagatggaagccgagcgcacg
ctctga

KEGG   Sphingomonas sp. NIBR02145: O3305_17935
Entry
O3305_17935       CDS       T10953                                 
Symbol
sdhC
Name
(GenBank) succinate dehydrogenase, cytochrome b556 subunit
  KO
K00241  succinate dehydrogenase cytochrome b subunit
Organism
spnb  Sphingomonas sp. NIBR02145
Pathway
spnb00020  Citrate cycle (TCA cycle)
spnb00190  Oxidative phosphorylation
spnb00650  Butanoate metabolism
spnb00720  Other carbon fixation pathways
spnb01100  Metabolic pathways
spnb01110  Biosynthesis of secondary metabolites
spnb01120  Microbial metabolism in diverse environments
spnb01200  Carbon metabolism
Module
spnb_M00009  Citrate cycle (TCA cycle, Krebs cycle)
spnb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
spnb_M00149  Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:spnb00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00020 Citrate cycle (TCA cycle)
    O3305_17935 (sdhC)
   00650 Butanoate metabolism
    O3305_17935 (sdhC)
  09102 Energy metabolism
   00190 Oxidative phosphorylation
    O3305_17935 (sdhC)
   00720 Other carbon fixation pathways
    O3305_17935 (sdhC)
SSDB
Motif
Pfam: Sdh_cyt
Other DBs
NCBI-ProteinID: WHU02050
LinkDB
Position
complement(3950175..3950531)
AA seq 118 aa
MAASITHRVTGSGLATVGTILFVWWLVALASGPAAYACFLDVFTVKSGALNIVGYVFGIG
LTYSFFQHLSTGVRHFFLDQGANFELKANKTTALLTYVAAILLTIAFWGFIIWGKTNG
NT seq 357 nt   +upstreamnt  +downstreamnt
atggcggcctcgatcacgcaccgcgtcaccggcagcgggctggcgaccgtggggacgatc
ctgttcgtctggtggcttgtcgcgctggcttccggcccggcggcctatgcctgcttcctc
gacgtgttcacggtgaagtccggcgcgctcaacatcgtcggctatgtcttcggaatcggc
cttacctactccttcttccagcacctgagcaccggcgtgcgccacttcttcctggaccag
ggcgccaatttcgagctcaaggccaacaagacgaccgcgctgctgacctatgtcgccgcg
atcctcctcaccatcgccttctggggcttcatcatctggggtaagaccaatgggtaa

KEGG   Sphingomonas sp. NIBR02145: O3305_17930
Entry
O3305_17930       CDS       T10953                                 
Symbol
sdhD
Name
(GenBank) succinate dehydrogenase, hydrophobic membrane anchor protein
  KO
K00242  succinate dehydrogenase membrane anchor subunit
Organism
spnb  Sphingomonas sp. NIBR02145
Pathway
spnb00020  Citrate cycle (TCA cycle)
spnb00190  Oxidative phosphorylation
spnb00650  Butanoate metabolism
spnb00720  Other carbon fixation pathways
spnb01100  Metabolic pathways
spnb01110  Biosynthesis of secondary metabolites
spnb01120  Microbial metabolism in diverse environments
spnb01200  Carbon metabolism
Module
spnb_M00009  Citrate cycle (TCA cycle, Krebs cycle)
spnb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
spnb_M00149  Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:spnb00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00020 Citrate cycle (TCA cycle)
    O3305_17930 (sdhD)
   00650 Butanoate metabolism
    O3305_17930 (sdhD)
  09102 Energy metabolism
   00190 Oxidative phosphorylation
    O3305_17930 (sdhD)
   00720 Other carbon fixation pathways
    O3305_17930 (sdhD)
SSDB
Motif
Pfam: Sdh_cyt CybS
Other DBs
NCBI-ProteinID: WHU02049
LinkDB
Position
complement(3949793..3950182)
AA seq 129 aa
MGNGTSIGKVRGLGSAKEGAHHWWHQRLTGGANLILTLWFVLSVALLPAYDFETVRHWLA
QTQVAVPLILLVIATFYHFRLGLQVVIEDYIHDEVHIVLMVLLNFFTLTTGTLAIFSILK
IAFTAGAAL
NT seq 390 nt   +upstreamnt  +downstreamnt
atgggtaacggcaccagcatcggcaaggtccgcggcctcggctccgccaaggaaggcgcg
catcactggtggcaccagcggctgaccggcggcgccaacctgatcctcactctgtggttc
gtgctcagcgtcgcgctgctgccggcttatgatttcgagacggtccgccactggctggct
cagacccaggtcgcggtgccgctgatcctgctcgtcatcgccaccttctatcacttccgc
ctcggcctgcaggtggtgatcgaagactatatccatgacgaagtgcacatcgtgctgatg
gtgctgctgaacttcttcacgctgacgaccggcacgctcgccatcttctcgattctcaag
atcgccttcacggcaggagctgcgctctga

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