Sphingomonas sp. NIBR02145: O3305_18350
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Entry
O3305_18350 CDS
T10953
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spnb Sphingomonas sp. NIBR02145
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spnb03016
]
O3305_18350
Enzymes [BR:
spnb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
O3305_18350
Transfer RNA biogenesis [BR:
spnb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
O3305_18350
Prokaryotic type
tRNA splicing ligases
O3305_18350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WHU02127
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All DBs
Position
4044037..4045263
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AA seq
408 aa
AA seq
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MTETLYDFQHVEGGVPIKMWTRGVPVEDGARDQLARAAKMPFVFKHVAAMPDVHIGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLVASDLPDNLEGIRSAIERAVPHGRSMNRN
KRDTGSWGDPPPAIVEAWATLAQRFDRIVEKYPKLKNTNHLVHLGTLGTGNHFIELCLDQ
DQRVWVMLHSGSRGVGNAIGTYFIELAKQDMRKWHINLPDENLAYFPEGTDHFEDYVEAV
GWAQDFAALNRRMMMTNVIRALRGQIAKPFDAELEAVNCHHNYVQRENHFGENVLVTRKG
AVRAAKGVLGIIPGSMGAKSFIVRGLGNAESFDSCSHGAGRVMSRTAAKKLVTLDEHIRD
TAGVACRKDEGVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagacgctgtatgatttccagcacgtcgaagggggcgtgccgatcaagatgtgg
acccgtggcgtgcctgtggaagacggggcccgcgaccagctggcgcgcgcggcgaagatg
ccgttcgtgttcaagcatgtcgccgcgatgcccgatgtccatatcggcatcggcgcgacc
gtcggctcggtgatcccgaccaagggcgcggtgatccctgccgcggtgggtgtcgatatc
ggctgcggcatgatggcggcgcgcacctcgctggtggcaagcgacctgcccgacaatttg
gaagggatccgcagcgcgatcgagcgcgccgtgccgcacggccggtcgatgaaccgcaac
aagcgcgacacgggttcgtggggcgatccgcccccggcgatcgtcgaagcctgggcaacg
cttgcccagcgattcgaccggatcgtcgagaagtatccgaagctcaagaacaccaatcac
ctggtgcatctggggactttgggcacgggcaaccacttcatcgagctgtgcctggatcag
gaccagcgcgtgtgggtgatgctccattcggggtcgcgcggcgtcggcaatgcgatcggc
acctacttcatcgagctggcgaagcaggacatgcgcaagtggcacatcaacctgcccgac
gagaacctggcctatttcccggaagggaccgaccatttcgaagactatgtcgaggcggtc
ggctgggcgcaggacttcgcggcgctgaaccggcggatgatgatgaccaacgtcatccgc
gcgctgcgcgggcagatcgccaagccgttcgatgcggagctggaggcagtcaactgccac
cacaattatgtccagcgcgaaaaccacttcggtgagaatgtgctggtcacccgcaagggc
gcggtccgcgcggccaagggcgtgctggggatcatccccggatcgatgggcgccaagtcg
ttcatcgtgcgcggcctgggcaacgcggaatcgttcgacagctgcagccacggggcgggg
cgcgtgatgtcccgcaccgcggccaagaagctggtgacgctcgacgagcatatccgtgac
accgcgggtgtggcgtgccgcaaggacgagggcgtgatcgacgagacgccgaaggcgtac
aagccgatcgaggccgtgatggcggcgcaggccgacctggtcgagatcgtccatacgctc
aagcaggtggtgtgcgtgaagggctaa
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