Sphingomonas sp. NIBR02145: O3305_20110
Help
Entry
O3305_20110 CDS
T10953
Name
(GenBank) helicase-related protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O3305_20110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spnb03400
]
O3305_20110
Enzymes [BR:
spnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O3305_20110
DNA repair and recombination proteins [BR:
spnb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O3305_20110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
AAA_30
ResIII
SecA_DEAD
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WHU02458
LinkDB
All DBs
Position
complement(4387634..4390837)
Genome browser
AA seq
1067 aa
AA seq
DB search
MPEPAVRALATPDKVRPAPIGAAAAQLAEILALEDVIVAAGDEQRAAALARTLDALTEAE
IIYCPGSDAIPGDDAPASPVNVGQRVSALRRLRLAQAHERQRRIALVTSGEALGHRYPPP
QAFDAEPPRVVRGEAVDLAGLFDGLVEAGYVSDERVDEPGEVALRGQVLDVFPADAELPL
RVEIVDGVIVSIRSYDPIDQRSVEELDARELGRVAEPDIGNEGVSLVDHLPGARLAIETG
AEERRRRLLALVADAERRRPGKARRHVVGDRDWSAAIAERKAIELEAEPAPVPRFVEERS
PMRAFGAFARALLAGGGTLAILGTARDLRFLRARVAKAAKAEITDMPDWESVVGAEPGRL
LALEVPLDRGFRRGNLVAVAAADLLGSRAERGDEIADSHQALVFALDEIRIGDVVVHEDH
GIGRVHGLGASPAGDTEAIALEYAGGAMRLVPIGQADRLWRYGADADAVTLDRLDGSSWE
KRRSAIDAAIAETAAGLIEIAAASAGRTAPVLAPDSAEYEKFAGGFAFTETRDQARAIDA
VRADLASGKPMDRLVIGDVGYGKTEVALRAAALAALAGYQVAIAAPTTVLARQHLENFAA
RFEGTGIEVAGLSRLSTPAERRRVRAGIADGSIRVVVGTGAVAGKGVTYNRLGLVIIDEE
QRFGTADKERLRKLGAGHALSLSATPIPRTLQSALVGIQQLSIIASPPARRQPIRTAVTA
FDKAAIRAALLRERSRAGQSFVVVPRIEDMAPLATILGELVPELEVLTAHGKMGAAEIDE
TMVRFARGDGDVLLATNIIEAGLDVPRANTMVIWRADRFGLSQLHQLRGRVGRGGRRGQV
ILLTDPDKALAPRTLKRLRTLEAFDRLGAGFAVSAADLDMRGAGDLMGDAQAGHMKLIGI
DLYQDLLGAALRAARGESVERWTPDLRLGIEGRLPGLLIPEAEIRITFYIRLARARSSSE
IDRIEEELEDRFGSLLPEARTLLAIARVRTEARSAGIARIDAGPAAIALTPRPDSGRAFE
ALALERKGDRLIARDRIEDPLARLERIEELLATIREAGEGGATDPVR
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcctgcggtccgcgccctcgctacccccgataaggtgcgccccgccccgatc
ggcgcggccgcggcccagttggccgagatccttgccttggaagacgtcatcgtcgccgct
ggcgatgaacagcgggcggcggcgcttgcccggacgctagacgctctcaccgaagcagag
atcatctactgccccggcagcgacgcgattccgggcgacgacgcgccggcatccccggtg
aatgtcgggcaacgcgtctctgcgttgcgccgcctccgcctcgcccaggcgcacgagcgc
cagcgccggatcgcattggtgaccagcggcgaggcgctcggccatcgctacccgccgcca
caggctttcgatgccgagccgcccagggttgtccgcggcgaggcagtggacctggccggc
ctcttcgacggcctcgtcgaggctggctatgtcagcgacgaacgggtcgacgaaccggga
gaagtggcgcttcggggccaggtcctcgacgtgtttccggccgatgccgagcttccgctg
cgcgtcgagattgtcgatggcgtgattgtttccatccggagctacgatccgatcgaccag
cgttcggtagaggaactcgacgcgcgcgagcttgggcgcgtggccgagccggatattggg
aacgaaggcgtctcgctcgtcgatcacctcccgggcgcccggctcgcgatcgagaccggc
gcggaggagcgccggcgtcgattgctcgccctcgtcgcggatgccgagcggaggcgtcct
ggcaaggcgcgccggcacgtcgtcggcgatcgcgactggtccgcagcgatcgcggagcgc
aaggctatagagctggaagccgaaccggctcccgtcccccggttcgtggaggaaagatcc
ccaatgcgcgcctttggagcattcgcgcgcgcgctgctcgcggggggtggcaccctggcg
atcctcggaaccgcccgcgacctgcgctttcttcgcgcacgcgtcgccaaggcggcaaag
gccgagatcacggacatgccggactgggagagcgtcgtcggagccgagcctggccgcctt
ctcgccctggaagtgcccctggaccgcggcttccgccgcggcaatctggttgccgttgcg
gccgccgatctgctcggcagccgggcggaacgcggcgatgagatcgccgacagccaccaa
gcattggtcttcgcgctggacgagatccgcatcggcgacgtcgtcgtccatgaggaccat
ggcatcggccgcgtccatgggctcggagcctcgccggcaggggacacggaagcgatcgca
ctcgaatatgcagggggcgcaatgcggctcgtgccgatcggccaagccgatcgcctgtgg
cgctacggcgcggacgccgacgcagtgacgctggacaggctcgacggttccagttgggag
aagcgccgttccgcgatcgacgccgcgatcgcggagaccgcagcggggctgatcgagatc
gcagcggcgagcgccgggcgaacggcgccggtgctcgcgccggactcggctgagtatgag
aaattcgccggcggattcgcattcaccgagacgcgggaccaggccagggcgatcgatgcg
gtgcgcgccgatctcgcctcgggaaagccgatggaccgcctcgtcatcggcgatgttgga
tacggcaagaccgaggtggcgctgcgcgcggccgcgctcgctgcgcttgcgggatatcag
gtcgcgatcgccgcccccaccaccgtgctcgcgcgccagcaccttgaaaatttcgccgcg
cggttcgagggaaccggaatagaggtcgcgggtctgtcccggctttccacgccggccgag
cgcaggcgcgtccgagccggcatcgcggacggctcgatccgggtcgtcgtcggcacgggc
gccgtggccggcaagggcgtcacctacaacaggctaggcctggtcatcatcgacgaagag
cagcggttcggcacagccgacaaggaacgccttcgtaagctgggggcaggccatgcgctc
tcgctgagcgcgactccgatcccgcgcacgctgcaaagcgcacttgtcggcatccagcag
ctctcgatcatcgcatcgccgccagcgcggcggcagccgatccgcactgcggtcaccgcg
ttcgacaaggccgcgatacgggcggcactgctgcgcgagcgcagccgggcgggccagagc
ttcgtggtcgtgccgcgtatcgaggacatggcgccgctcgccacaattctcggcgagctc
gtgccggaactcgaggtgctgactgcccatggcaagatgggcgcggcggagatcgacgag
accatggtccgcttcgctcggggcgacggcgacgtcctgctggcgaccaacatcatcgag
gccggcctcgacgtaccgcgcgcgaacaccatggtgatctggcgggcggaccgtttcggc
ctgagccagctccaccagctgcgcggacgcgtcggtcgcggcggacgccgtggccaggtc
atcctcctgaccgacccggacaaggcgctggcgccgcgaacgttgaagcgcctgcggacg
ctcgaggccttcgatcggctcggcgcaggcttcgcggtgagcgcggcggacctggacatg
cgcggcgcgggcgacctcatgggcgacgcacaggccggccatatgaagctgatcggcata
gacctctatcaggatctgctgggggcggcgcttcgcgccgcgcgcggcgaatccgtggag
cgctggacgcccgatcttcgcctcggcatcgagggccggctcccgggattgttgattccg
gaagctgagatccggatcactttctatatcaggctcgcccgtgcgcgatcgtcgagcgag
atcgatcggatcgaggaggagctggaagatcggttcggatcgctgcttcccgaagcgagg
acattgcttgcgatcgcccgcgtccgaaccgaagcgcgctcggcaggcatcgcccgcatt
gatgccgggccggctgcgatcgcgctgacgccgcgacccgatagcggtcgcgcgttcgag
gccctcgcgctcgagcggaagggcgaccggctgatcgcaagggatcgcatcgaggatccg
ctcgccaggctcgagcggatagaggaattgctcgcgacgatccgcgaggccggcgagggc
ggagccacggaccctgttcggtaa
DBGET
integrated database retrieval system
