Streptococcus pneumoniae gamPNI0373 (virulent serotype 1): HMPREF1038_00006
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Entry
HMPREF1038_00006 CDS
T02334
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spng
Streptococcus pneumoniae gamPNI0373 (virulent serotype 1)
Pathway
spng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF1038_00006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spng03400
]
HMPREF1038_00006
Enzymes [BR:
spng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF1038_00006
DNA repair and recombination proteins [BR:
spng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF1038_00006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AFS42098
LinkDB
All DBs
Position
4952..8461
Genome browser
AA seq
1169 aa
AA seq
DB search
MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
IAASRLILPSPNAFKDSIVKISVGEEYAQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
DIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQS
ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
DDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
QIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGDQISIPVEQIHL
LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
HKQVVILVPTTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILI
GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQVYYLYNKVDTIVQKVSE
LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDA
YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQN
KKDYEILEGLLIFGESLLEIKESKEENSI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccttattagatttattctcagaaaatgatcagattaaaaaatggcatcaaaat
ttaacagataagaaaagacaactaatacttggtttatcaacatctactaaggctcttgca
attgcaagcagtttagaaaaagaagataggattgtgttattgacgtcaacttatggagaa
gcagaaggacttgttagtgatcttatttctatcttgggtgaggaactcgtctatccattt
ttggtagatgatgctcctatggtggagtttttgatgtcttcacaggaaaaaattatttca
cgggttgaagccttgcgttttttgactgattcatctaagaaagggattttagtttgtaat
atcgcagcaagtcgattgattttaccgtctcccaatgcattcaaagatagtattgtaaaa
atctcagttggtgaagaatatgctcaacacgcgtttatccatcagttaaaggaaaatggc
tatcgaaaagttactcaagtacaaactcagggtgaatttagtcttcgaggagatatttta
gatatttttgaaatatcccagttagaaccttgtcgaattgagttttttggtgatgaaatt
gatggtatcaggtcatttgaagtagaaacacaattatcgaaagaaaataagacagaactc
actatctttccagctagtgatatgcttttgagagaaaaggattatcaacgaggacagtca
gctttagaaaaacaaatttcaaaaactttatcacctattttgaaatcatacctagaagaa
attctttcaagttttcatcaaaagcaaagtcatgcagattctcggaagtttttatctttg
tgctatgataagacatggactgtctttgattatattgaaaaagatactccaatattcttt
gatgattatcaaaaattgatgaatcagtatgaagtctttgaaagagaattagcgcagtac
tttacagaagaattacagaatagtaaagcattttctgatatgcagtatttttctgatatt
gaacaaatctataaaaaacaaagtccagtgacctttttctctaatcttcaaaagggttta
ggaaatctcaaatttgacaaaatttatcaattcaatcaatatcctatgcaggaatttttc
aatcagttttcttttctaaaagaagaaattgaacgatataaaaaaatggattacaccatt
attctgcagtctagcaattcaatgggaagtaaaacattggaggatatgttagaggaatat
cagattaaattggattctagagataagacaagtatctgtaaagaatctgtaaacttaata
gaaggtaatctcagacatggttttcattttgtagatgaaaagattttattgataactgaa
catgagatttttcaaaagaaattaaagcgtcgttttcgaagacaacatgtttcaaatgca
gagagattaaaagattacaatgaacttgaaaaaggggactatgttgtccatcatatccat
gggattggtcaatatctaggaattgaaaccattgaaatcaagggaattcatcgtgattat
gtcagtgtccaataccaaaatggtgatcaaatttctattcccgtggaacagattcatcta
ctgtccaaatatatttcaagtgatggtaaagctccaaaactcaataaattaaatgacggt
cattttaaaaaggccaagcaaaaggttaagaaccaggtagaggatatagctgatgattta
atcaaactctactctgaacgtagtcagttgaagggttttgctttctcagctgatgatgat
gatcaagatgcctttgatgatgctttcccttatgttgaaacggatgaccaacttcgtagt
attgaggaaatcaagagggatatgcaggcttctcagccaatggatagacttttagttggg
gatgttggttttggaaagactgaagttgctatgcgtgcagcctttaaagcagtcaatgat
cacaaacaggttgtcattctagttccgacgacggttttagcgcaacagcactatacgaat
tttaaggaacgattccaaaattttgcagttaatgttgatgtgttgagtcgctttagaagt
aaaaaagagcagactgcaacacttgaaaaattgaaaaacggtcaagtcgatattttgatt
ggaacacatcgtgttttgtcaaaagatgttgtgtttgctgatttgggcttgatgattatt
gatgaggaacagcgatttggtgtcaagcataaggaaactttgaaagaactgaagaaacaa
gtggatgtcctaaccttgaccgctacgccaatccctcgtaccctccatatgtctatgctg
ggaatcagagatttgtctgttattgaaactccgccgactaatcgctatcctgttcagacc
tatgttttggaaaagaatgatagtgtcattcgtgatgctgtcttgcgtgaaatggagcgt
ggaggtcaagtttattatctttacaacaaagttgatacaattgttcagaaggtttcagaa
ttacaggagttgattccagaggcttcgattggatatgttcatggtcgaatgagtgaagtc
cagttggaaaatactctattagactttattgagggacaatacgatatcttggtgacgact
actattattgagacaggggtggacattccaaatgctaatactttatttattgaaaatgcg
gaccatatgggcttgtcaaccttatatcagttaagaggaagagtcggtcgtagtaatcgt
attgcttatgcttatctcatgtatcgtccagaaaaatcaatcagtgaagtctctgaaaag
agattagaagcgattaaaggatttacagaattgggctctggctttaagattgcaatgcga
gatctttcgattcgtggagcaggaaatcttttaggaaaatcccagtctggtttcattgat
tctgttggttttgaattgtattcgcagttattagaggaagctattgctaaacgaaacggt
aatgctaacgctaacacaagaaccaaagggaatgctgagttgattttgcaaattgatgcc
tatcttcctgatacttatatttctgatcaacgacataagattgaaatttacaagaaaatt
cgtcaaattgacaaccgtgtcaattatgaagagttacaagaggagttgatagaccgtttt
ggagaatacccagatgtagtagcctatcttttagagattggtttggttaaatcatacttg
gacaaggtctttgttcaacgtgtggaaagaaaagataataaaattacaattcaatttgaa
aaagtcactcaacgattgtttttagctcaagattattttaaagctttatccgtaacgaac
ttaaaagcaggcatcgctgagaataagggattaatggagcttgtatttgatgtccaaaat
aagaaagattatgaaattttagaaggtctgctgatttttggagaaagtttattagagata
aaagagtctaaggaagaaaattccatttga
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