Streptococcus pneumoniae gamPNI0373 (virulent serotype 1): HMPREF1038_00194
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Entry
HMPREF1038_00194 CDS
T02334
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spng
Streptococcus pneumoniae gamPNI0373 (virulent serotype 1)
Pathway
spng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF1038_00194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spng03019
]
HMPREF1038_00194
Messenger RNA biogenesis [BR:
spng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF1038_00194
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AFS42275
LinkDB
All DBs
Position
complement(160727..162406)
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AA seq
559 aa
AA seq
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MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKL
YEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIICTGDFKFDFTPVGEPADLH
RMAALGEDGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQ
QATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEILILCTG
SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGK
VNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNG
DVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQM
ILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLY
ENTEREPIIIPMILTPDEE
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcctacactcttaaacctgaagaagtcggcgtttttgccatcggtggtctaggagaa
atcgggaaaaacacttacggaattgaataccaagacgagattatcatcgtcgatgctggg
attaaattcccagaagatgacttgcttggtatcgactatgtcattcctgactactcttac
atcgtagacaatatcgaccgcgtcaaggctgttttaatcacacacggacacgaggaccac
attggtgggattccgttcctactcaagcaagcaaatgtccctatttatgctggaccgctt
gccttggctttgatccgtgggaaactcgaagaacacggcctcttgcgcaacgccaaactt
tacgaaatcaaccacaacaccgagttgacctttaaaaatctcaaggcaactttctttaga
acgactcactctattccagaacctttgggaattgtcatccatactcctcaagggaaaatc
atctgtacaggtgactttaagttcgactttactccagttggagaacctgcggacttgcac
cgtatggcagccctaggtgaagatggagtgctttgcttgctctctgactcgaccaatgct
gaggttccaacctttaccaactctgaaaaggttgtcggccagtccatcatgaagattatc
caaggtatcgagggacgtatcatctttgcatccttcgcctcaaatatcttccgtctccaa
caagcaacggaagctgctgttaagactgggcgcaagattgcggtctttggtcgctctatg
gaaaaggccattgtcaacggaatcgatcttggctacatcaaagctcctaagggaaccttt
attgagccaaatgaaatcaaagactatcctgcaggtgagattctgatcctctgtacaggt
agtcaaggtgaacctatggcagccctctctcgtatcgccaacggaacccaccgtcaggta
caactccaaccaggcgataccgttatcttctcttctagtcccatccctggaaacactact
agcgtcaacaagctgattaacattatttctgaagctggtgtcgaagttatccacggtaaa
gtgaacaatatccatacatctggacacggtggtcagcaagagcaaaaactcatgctccgc
ttgattaagccaaaatacttcatgcctgtccacggtgaataccgcatgcaaaaagtccac
gctggactagcagtggatactggtgttgagaaggacaatatctttatcatgagcaatggc
gatgtgcttgcccttactgctgactcagctcgtatcgcaggtcatttcaacgcccaagat
atctatgtcgatggaaatcgtatcggtgaaattggcgcagctgtcctcaaagatcgtcgc
gatctatctgaagacggtgtcgttctggcagtcgcaactgttgacttcaaatcgcagatg
attctatctggtccagacatcctcagccgaggctttgtctacatgagagagtctggcgac
ttgattcgccaaagccagcgtatcctcttcaatgccattcgtatcgcactgaaaaataag
gatgctagcgtgcaatctgtcaatggtgccattgtcaacgctattcgccccttcctctat
gaaaataccgaacgtgaaccgatcatcatcccgatgatcctcacaccagatgaagaataa
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