Streptococcus pneumoniae gamPNI0373 (virulent serotype 1): HMPREF1038_00994
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Entry
HMPREF1038_00994 CDS
T02334
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spng
Streptococcus pneumoniae gamPNI0373 (virulent serotype 1)
Pathway
spng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF1038_00994 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spng03019
]
HMPREF1038_00994 (rnr)
03016 Transfer RNA biogenesis [BR:
spng03016
]
HMPREF1038_00994 (rnr)
Enzymes [BR:
spng01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HMPREF1038_00994 (rnr)
Messenger RNA biogenesis [BR:
spng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF1038_00994 (rnr)
Transfer RNA biogenesis [BR:
spng03016
]
Prokaryotic type
tRNA degradation factors
HMPREF1038_00994 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1_RRP5
RNase_II_C_S1
ASL_C
CSD
Motif
Other DBs
NCBI-ProteinID:
AFS43050
LinkDB
All DBs
Position
905128..907482
Genome browser
AA seq
784 aa
AA seq
DB search
MKDRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLSLMERKHQIRFEEDGSLTLEI
KKKHEITLKGIFHAHKNGFGFVSLEGEEDDLFVGKNDVNYAIDGDTVEVVIKKVADRNKG
TAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPALKLEGTEV
LKVFIDKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSEFPEAVVKEAESVPD
APSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLEFGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDKHGRVVNYTI
TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD
TNEAKILVDKQGKPVDIVLRQRGIAERMIESFMLMANETVAEHFSKLDLPFIYRIHEEPK
AEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYS
EHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEHFEQVIPEIATQSSNR
ERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEIDFSFVPSEFDVIEKGLKQSSR
SGRGRDSNRRSDKKEDKRKSGRSNDKRKHSQKDKKKKGKKPFYKEVAKKGAKHGKGRGKG
RRTK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagaataaaagaatatttacaagacaagggaaaggtgactgttaatgatttg
gctcaggctttgggaaaagacagttccaaggattttcgtgagttgattaaaaccttgtcc
ttaatggaaagaaagcaccaaattcgttttgaagaagatggtagtctgacattagaaatt
aagaaaaaacatgagattaccctcaaggggatttttcatgcccataaaaatggctttggc
tttgttagtctggaaggcgaggaggacgacctttttgtagggaaaaatgatgtcaactat
gctattgatggtgataccgtcgaggtagtgattaagaaagtcgctgaccgcaataaggga
acagcagcagaagccaaaattattgatatcctagaacacagtttgacaacagttgtcggg
caaatcgttctggatcaggaaaaacctaagtatgctggctatattcgttcaaaaaatcag
aaaatcagtcaaccgatttatgttaagaaaccagccctaaaattagaaggaacagaagtt
ctcaaagtctttatcgataaatacccaagcaagaaacatgatttctttgtcgcgagtgtt
ctcgatgtagtgggacactcaacggatgtcggaattgatgttcttgaggtcttggaatca
atggacattgtatccgagtttccagaagctgttgttaaggaagcagaaagtgtgcctgat
gctccgtctcaaaaggatatggaaggtcgtctggatctaagagatgaaattacctttacc
attgacggtgcggatgccaaggacttggacgatgcagtgcatatcaaggctctgaaaaat
ggcaatctggagtttggggttcacatcgcagatgtttcttattatgtgaccgaggggtct
gcccttgacaaggaagcccttaaccgtgcgacttctgtttacgtgacagaccgagtggtg
ccaatgcttccagaacgactatcaaatggcatctgctctctcaatccccaagttgaccgc
ctgacccagtctgctattatggagattgataaacatggtcgtgtggtcaactataccatt
acacaaacagttatcaagaccagttttcgtatgacctatagcgatgtcaatgatatccta
gctggcgatgaagaaaagagaaaagaatatcataaaattgtatcaagtatcgaactcatg
gccaagcttcatgaaactttagaaaacatgcgtgtgaaacgtggagctctcaattttgat
accaatgaagcgaagattttagtggataaacaaggtaagcctgttgatatcgttcttcgg
cagcgtggtattgccgagcggatgattgagtcttttatgttgatggctaatgaaacagtt
gccgaacatttcagcaagttggatttgccttttatctatcgaattcacgaggagcctaag
gctgaaaaggttcagaagtttattgattatgcttcgagttttggcttgcgcatttatgga
actgccagtgagattagtcaggaggcacttcaagacatcatgcgtgctgttgagggagaa
ccttatgcagatgtattgtccatgatgcttcttcgctctatgcagcaggctcgttattcg
gagcacaatcacggccactatggactagctgctgactattatactcactttaccagtcca
attcgtcgttatccagaccttcttgttcaccgtatgattcgggattacggccgttctaag
gaaatagcagagcattttgaacaagtgattccagagattgcgacccagtcttccaaccgt
gaacgtcgtgccatagaagctgagcgtgaagtcgaagccatgaaaaaggctgagtatatg
gaagaatacgtgggtgaagagtatgatgcagttgtatcaagtattgtcaaattcggtctc
tttgtcgaattgccaaacacagttgaaggcttgattcacatcactaatctgcctgaattt
tatcatttcaatgagcgtgatttgactcttcgtggagaaaaatcaggtatcactttccga
gtgggtcagcagatccgtatccgtgttgaaagagcggataaaatgactggagagattgat
ttttcattcgtacctagtgagtttgatgtgattgaaaaaggcttgaaacagtctagtcgt
agtggcagagggcgtgattcaaatcgtcgttcggataagaaggaagacaagagaaaatca
ggacgctcaaatgataagcgtaagcattcacaaaaagacaagaagaaaaaaggaaagaaa
cctttttacaaggaagtagctaagaaaggagccaagcatggcaaagggcgagggaaaggt
cgtcgcacaaaataa
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