Streptococcus pneumoniae SPN994038 (serotype 3): SPN994038_08640
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Entry
SPN994038_08640 CDS
T02630
Symbol
rnr
Name
(GenBank) putative exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spnm
Streptococcus pneumoniae SPN994038 (serotype 3)
Pathway
spnm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spnm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPN994038_08640 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spnm03019
]
SPN994038_08640 (rnr)
03016 Transfer RNA biogenesis [BR:
spnm03016
]
SPN994038_08640 (rnr)
Enzymes [BR:
spnm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SPN994038_08640 (rnr)
Messenger RNA biogenesis [BR:
spnm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPN994038_08640 (rnr)
Transfer RNA biogenesis [BR:
spnm03016
]
Prokaryotic type
tRNA degradation factors
SPN994038_08640 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1_RRP5
RNase_II_C_S1
CSD
Motif
Other DBs
NCBI-ProteinID:
CCP30600
LinkDB
All DBs
Position
875235..877589
Genome browser
AA seq
784 aa
AA seq
DB search
MKDRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLSLMERKHQIRFEEDGSLTLEI
KKKHEITLKGIFHAHKNGFGFVSLEGEEDDLFVGKNDVNYAIDGDTVEVVIKKVADRNKG
TAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPALKLEGTEV
LKVFIDKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSEFPEAVVKEAESVPD
APSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDKHGRVVNYTI
TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD
TNEAKILVDKQGKPVDIVLRQRGIAERMIESFMLMANETVAEHFSKLDLPFIYRIHEEPK
AEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSMQQARYS
EHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEHFEQVIPEIATQSSNR
ERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEIDFSFVPSEFDVIEKGLKQSSR
SGRGRGSNRRSDKKEDKRKSGRSNDKRKHSQKDKKKKGKKPFYKEVAKKGAKHGKGRGKG
RRTK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagaataaaagaatatttacaagacaagggaaaggtgactgttaatgatttg
gctcaggctttgggaaaagacagttccaaggattttcgtgagttgattaaaaccttgtcc
ttaatggaaagaaagcaccaaattcgttttgaagaagatggtagtctgacattagaaatt
aagaaaaaacatgagattaccctcaaggggatttttcatgcccataaaaatggctttggc
tttgttagtctggaaggcgaggaggacgacctttttgtagggaaaaatgatgtcaactat
gctattgatggtgataccgtcgaggtagtgattaagaaagtcgctgaccgcaataaggga
acagcagcagaagccaaaattattgatatcctagaacacagtttgacaacagttgtcggg
caaatcgttctggatcaggaaaaacctaagtatgctggctatattcgttcaaaaaatcag
aaaatcagtcaaccgatttatgttaagaaaccagccctaaaattagaaggaacagaagtt
ctcaaggtctttatcgataaatacccaagcaagaaacatgatttctttgtcgcgagtgtt
ctcgatgtggtgggacactcaacggatgtcggaattgatgttcttgaggttttggaatca
atggacattgtatccgagtttccagaagctgttgttaaggaagcagaaagtgtgcctgat
gctccgtctcaaaaggatatggaaggtcgtctggatctaagagatgaaattacctttacc
attgacggtgcggatgccaaggacttggacgatgcagtgcatatcaaggctctgaaaaat
ggcaatctggagcttggggttcacatcgcagatgtttcttattatgtgaccgaggggtct
gcccttgacaaggaagcccttaaccgtgcgacttctgtttacgtgacagaccgagtggtg
ccaatgcttccagaacgactatcaaatggcatctgctctctcaatccccaagttgaccgc
ctgacccagtctgctattatggagattgataaacatggtcgtgtggtcaactataccatt
acacaaacagttatcaagaccagttttcgtatgacctatagcgatgtcaatgatatccta
gctggcgatgaagaaaagagaaaaaaatatcataaaattgtaccaagtatcgaactcatg
gccaagcttcatgaaactttagaaaacatgcgtgtgaaacgtggagctctcaattttgat
accaatgaagcgaagattttagtggataaacaaggtaagcctgttgatatcgttcttcgg
cagcgtggtattgccgagcggatgattgagtcttttatgttgatggctaatgaaacagtt
gccgaacatttcagcaagttggatttgccttttatctatcgaattcacgaggagcctaag
gctgaaaaggttcagaagtttattgattatgcttcgagttttggcttgcgcatttatggg
actgccagtgagattagtcaggaggcacttcaagacatcatgcgtgctgttgagggagaa
tcttatgcagatgtattgtccatgatgcttcttcgctctatgcagcaggctcgttattcg
gagcacaatcacggccactatggactagctgctgactattatactcactttaccagtcca
attcgtcgttatccagaccttcttgttcaccgtatgattcgggattacggccgttctaag
gaaatagcagagcattttgaacaagtgattccagagattgcgacccagtcttccaaccgt
gaacgtcgtgccatagaagctgagcgtgaagtcgaagccatgaaaaaggctgagtatatg
gaagaatacgtgggtgaagagtatgatgcagttgtatcaagtattgtcaaattcggtctc
tttgtcgaattgccaaacacagttgaaggcttgattcacatcactaatctacctgaattt
tatcatttcaatgagcgtgatttgactcttcgtggagaaaaatcaggtatcactttccga
gtgggtcagcagatccgtatccgtgttgaaagagcggataaaatgactggagagattgat
ttttcattcgtacctagtgagtttgatgtgattgaaaaaggcttgaaacagtctagtcgt
agtggcagagggcgtggttcaaatcgtcgttcggataagaaggaagacaagagaaaatca
ggacgctcaaatgataagcgtaagcattcacaaaaagacaagaagaaaaaaggaaagaaa
cctttttacaaggaagtagctaagaaaggagccaagcatggcaaagggcgagggaaaggt
cgtcgcacaaaataa
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