Sphingomonas sp. NBWT7: F1C10_12175
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Entry
F1C10_12175 CDS
T11863
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spnw Sphingomonas sp. NBWT7
Pathway
spnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C10_12175 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spnw03021
]
F1C10_12175 (rho)
03019 Messenger RNA biogenesis [BR:
spnw03019
]
F1C10_12175 (rho)
Transcription machinery [BR:
spnw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F1C10_12175 (rho)
Messenger RNA biogenesis [BR:
spnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F1C10_12175 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
S1CSD-TOTE-2
ATPase_2
AAA
AAA_25
Spore_III_AA
NACHT
DnaB_C
AAA_16
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
QNE32623
LinkDB
All DBs
Position
complement(2535425..2536681)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKKAPAELVQLAEELGVEGASTLRKQDLMFAILKVQAEEGETIMGEGTIEVLPD
GFGFLRSPQANYLAGPDDIYVSPNQVRKHGLRTGDTVEGEIRGPKDGERYFALTKLMSVN
FDDPDAVRHRVNFDNLTPLYPDERLKMEIEDPTAKDKTGRVLDLVSPIGKGQRCLIVAPP
RVGKTVMMQNIARAISANHPEVFLLVLLIDERPEEVTDMQRTVNGEVVSSTFDEPATRHV
AVAEMVIEKAKRLVEHKKDVVILLDNITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIISTSLIDTGSRMDEVIFEEFKGTGNAEIVLDRKVSDKRIFPAIDV
SKSGTRKEELLVEKDKLSKMWVLRRILMQMGTVDAMEFLLGKMKDSKTNEDFFASMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaagacttgaagaagaaagccccggccgagctggtccagcttgccgaggag
ctcggcgtcgagggcgcctcgacgctgcgcaagcaggacctgatgttcgcaatcctcaag
gttcaggccgaggaaggcgagacgatcatgggcgagggcacgatcgaagtgctgcccgac
ggcttcggcttcctgcgcagcccccaggccaattatctcgccggccccgacgacatctac
gtctcccccaatcaggtgcgcaagcacgggctgcgcaccggcgacaccgtcgagggcgag
atccgcgggcccaaggatggcgagcgctatttcgcgctgaccaagctgatgagcgtcaac
ttcgacgatcccgacgccgtccgccaccgcgtcaacttcgacaacctgacgccgctctat
cccgacgagcggctgaagatggagatcgaggacccgacggcgaaggacaagacgggccgc
gtactcgatctcgtctcgccgatcggcaagggtcagcgctgcctgatcgtcgccccgccg
cgcgtcggcaagacggtgatgatgcagaacatcgcgcgcgcgatctcggcgaaccatccc
gaggtgttcctgctggtgctgctgatcgacgagcggcccgaggaagtcaccgacatgcag
cgcacggtgaacggcgaggtcgtctcgtcgaccttcgacgagccggcgacgcgccacgtc
gcggtggccgagatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaggacgtg
gtgatcctgctcgacaacatcacccgcctcggccgcgcctacaacacggtggtgccgtcg
tcgggcaaggtgctgaccggcggtgtcgacgccaacgcgctgcagcgtccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggatcgctgacgatcatctcgacgtcgctg
atcgacaccggcagccgcatggacgaggtgatcttcgaggagttcaagggcaccggcaac
gcggagatcgtgctcgaccgcaaggtgtcggacaagcgcatcttcccggcgatcgacgtg
tcgaagagcggcacgcgcaaggaggagctgctggtcgagaaggacaagctgtccaagatg
tgggtgctgcgtcgcatcctgatgcagatgggcaccgtcgacgcgatggagttcctgctc
ggcaagatgaaggattccaagaccaacgaggatttcttcgccagcatgaatcagtag
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