Schizosaccharomyces pombe (fission yeast): 2539082
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Entry
2539082 CDS
T00076
Symbol
pus1, SPOM_SPCC126.03
Name
(RefSeq) tRNA/U2 snRNA pseudouridine synthase Lsp1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spo03016
]
2539082 (pus1)
Enzymes [BR:
spo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
2539082 (pus1)
Transfer RNA biogenesis [BR:
spo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
2539082 (pus1)
Prokaryotic type
2539082 (pus1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
RuvC
Motif
Other DBs
NCBI-GeneID:
2539082
NCBI-ProteinID:
NP_588446
PomBase:
SPCC126.03
SPCC126.03.1
UniProt:
O94396
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All DBs
Position
III:join(2120665..2121741,2121807..2122162,2122202..2122373)
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AA seq
534 aa
AA seq
DB search
MGRGGKRTWYNGDRREAKRNRPNSIYNGEGRPENLVVGEKKPKRKVACLVGYCGSGYHGM
QLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAARTDKGVHAAGNVISLKLIME
DEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEYMVPTYAFVPPKPSSILGNC
IMKNSPMPAEPINKENINQLSRSLFYEEGKEFWDDYDIAAKEILSLYEQDPEGFVNPYSK
RGAAALANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPDSVEDESAGSKIDPSYRLE
RALKHIEVLKLKNYRISADRLSVIRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTA
SDPFMIGDTEWISCKVHGQSFMLHQIRKMIALAILVVRTGCPVERIQDAFKKTKINIPKG
PGFGLLLESPFFKGYNEHKAPENNRDPIDFTKYEQKITAFKHAHIYDKIFLEEARKQVFH
CFLSFIDSYNEEDFSYLSDIGITEKTQEVSSKLPDVLSSDEEEDSAENKDDLEG
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtggtggtaaacgcacttggtacaatggtgatcgtcgagaagcgaaaaggaac
cgacctaattctatatacaatggagaaggtcggccagagaatttggtagttggagaaaaa
aagccgaaaagaaaggtcgcctgtcttgtaggttattgtggtagcggatatcatggtatg
caattgaatcctcctagtaaaacaatcgaaggagatctttttgatgcttttgtgaaggct
ggtgccgtttcttcttataacgctgatgacccaaagaaagttgctttagcaagagccgca
agaactgataaaggagttcatgccgctggaaatgttatcagtctcaaacttataatggaa
gatgagaagttaattgaaaaagtgaacgaacacctccctccttccattcgcttatgggat
gtgatccgtactattaattcttttaacccaaggacttattgcgaatctcgtatatatgaa
tatatggttccaacgtatgcttttgttccaccgaaaccttcgtccatacttggaaattgc
attatgaagaattctcccatgcctgctgagccaattaacaaggaaaatataaatcaactc
agtcgttcattattttatgaagaaggaaaggaattttgggatgattatgatattgcagcc
aaagagattttgagcctttatgaacaggatcctgaaggcttcgtaaatccatattctaaa
aggggagctgctgctcttgctaattcggaaaataataagggctctgaagcaggagtttcc
gctaaaactaatccagatatggattccgattcctctgctattgtaaacgagtttttaaag
cctgactctgttgaagacgaatctgctggttccaagattgatcccagttatcgtctcgaa
cgtgcacttaagcacattgaagtacttaaattaaaaaattaccgtatttccgcagatagg
ctgtccgttattcgagaaactttaaaccaatatgttggagttcataactttcacaatttt
actgtggggcaagcatttcatcagaagaatagtaatcgcgtgatccgttcttttactgca
tctgatccattcatgattggcgatacagaatggatttcatgtaaagttcatggtcaatct
tttatgttgcaccaaattagaaagatgattgcgcttgctattttagttgtacgaacgggt
tgtcctgttgagcgcatacaagatgcctttaaaaaaacaaaaattaacatacccaaggga
cctggttttggacttttattagagtcaccgttttttaaaggttataatgaacataaagct
ccagagaataatcgtgatcctatcgactttacaaagtacgagcaaaaaattactgctttt
aagcatgctcatatttatgataaaatttttctcgaagaagctcgtaaacaagtatttcat
tgttttttgtcttttattgacagttataatgaagaagatttcagttatttatcagatata
ggcattactgaaaagacgcaagaggtttcctcaaaattgcctgatgttctttctagcgat
gaagaagaagattcggctgaaaacaaggatgatttagagggctaa
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