Schizosaccharomyces pombe (fission yeast): 2539198
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Entry
2539198 CDS
T00076
Symbol
hnt3, SPOM_SPCC18.09C
Name
(RefSeq) aprataxin-like protein
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
2539198 (hnt3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spo03400
]
2539198 (hnt3)
Enzymes [BR:
spo01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
2539198 (hnt3)
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
2539198 (hnt3)
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
2539198 (hnt3)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
2539198 (hnt3)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
2539198 (hnt3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HIT
DcpS_C
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
2539198
NCBI-ProteinID:
NP_588388
PomBase:
SPCC18.09c
SPCC18.09c.1
UniProt:
O74859
Structure
PDB
PDBj
LinkDB
All DBs
Position
III:complement(join(1972757..1973427,1973663..1973690))
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AA seq
232 aa
AA seq
DB search
MSVHKTNDAFKVLMNSAKEPIVEDIPKKYRKQSFRDNLKVYIESPESYKNVIYYDDDVVL
VRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCL
SQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTP
TSNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDKSVSM
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtacacaagacgaatgatgctttcaaagtcttgatgaattctgcgaaagaaccc
attgttgaagacattccaaaaaagtataggaagcagtcatttcgggataatttaaaagtc
tatatcgaatcaccggaatcctataaaaatgtaatttattacgatgatgatgttgttcta
gtgcgggacatgtttccaaaatcaaaaatgcacttactactaatgactcgggatcctcat
ttaactcatgtgcatccactggaaattatgatgaaacacagatctctagtcgaaaaactt
gtgtcttatgtacagggcgacctatctggacttattttcgatgaggctcgaaactgtctc
tcccagcaattgacaaacgaggccttgtgtaattatatcaaggttggttttcacgctgga
ccatctatgaataacttgcatttacatattatgacacttgatcatgtttcgccttccttg
aagaattcggctcactatatttcctttacttcacccttctttgtaaaaatcgatacgcca
acttcaaaccttccaactagaggtaccctcacttctttatttcaggaagatttaaaatgc
tggaggtgtggtgaaacatttggacggcactttacaaaactcaaggctcatttacaagag
gagtacgacgattggctcgataaatcagtttcaatgtaa
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integrated database retrieval system
