Schizosaccharomyces pombe (fission yeast): 2539215
Help
Entry
2539215 CDS
T00076
Symbol
msh6, SPOM_SPCC285.16C
Name
(RefSeq) DNA mismatch repair protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
2539215 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spo03400
]
2539215 (msh6)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
2539215 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
nSTAND_NTPase5
AAA_14
AAA_16
Shugoshin_C
AAA_27
AAA_23
Motif
Other DBs
NCBI-GeneID:
2539215
NCBI-ProteinID:
NP_588344
PomBase:
SPCC285.16c
SPCC285.16c.1
UniProt:
O74502
LinkDB
All DBs
Position
III:complement(join(1827802..1830972,1831088..1831681))
Genome browser
AA seq
1254 aa
AA seq
DB search
MSVGNVGKQREKTKDSSAKTKQKTLFGFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADV
DNSSNVNKNSSSPERELPTSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHRSSPKRP
HDSLGEESPGKLLRTSVKQEPDSEEEIDSPTKKKSFKSLDTSIFQAEDQFRHPVSSKLEN
SELSEVDKPFIASRRSRKPVSYAESDEDEDFDDAPTKGSRHKRIVSDDESDDYVEPDHIS
EASSEASLPIDEVESMDEDVDGYSDHSVSVAAPIPKKESRKESSNSLYESYRLGSQIASP
SPSVSGSASPTKSNKNGVLNREEKRRQRMEAFKKENNERYEWLLDVRDADQNRVGDPNYD
PRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAIGHQVFSLKLT
DRVNMKMVGIPEASFDYWASQFIAKGYRIARVDQLETALGKEIKDRQRTQKEEKVVQRGL
TQVLTSGTLVDEAMLTSDLSTYCMAIKESLQSDNEEPSFGICFIDTSTGGFHMCEFTDDI
HRTKLDTLLTQVRPKELILEKSKISQKSIRAIKYCVSSSSIWNFIKPYTEFWDNERVERE
IIAGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFWYLRQLKLDKDMCSMGNFDEYDAS
QQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTA
INARLDVVELIADNPVIRDTIWGFLHKLPDLERLISRVHAGRSKPADFVRVLEGFQRINS
AFDQLREEFMEVAEGTLLGEIIQSAPNMKEELEAWTRAFNWQKASEEGVFEPEIGFEAEY
DTSQKYQSELKNELYALLEQYKKQLRCSSLNFKNIGKEVYQVEVPSDVKVPVNWCKMSGT
KKTNRYYNDELRKKIKKLLEAEELHLAIMSRMQEKFYIRFDSNYEQWLALIKYTASIDCF
FSLSQAAAALGEPYCRPEIIEQKDGHLYFEELRHPCINASAASTFVPNDVVLGGESPNMI
VLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSARSTF
MVELSETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQ
SLCVDFMHHRQVRLMQMAAAVDEKIRRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDA
AEEKASELEQASASFINASDDIALMSDFLQVLRISKSIEPLTAVNIPLILDSFE
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgggaacgttggcaagcaaagggagaaaacaaaagattcatcagctaaaaca
aagcagaaaaccctctttgggtttttctccaaaatcccgaatgtgaaacaagagaagtcg
gattctacattatctagtagttcgaatcacgactctaatcatgatacgcctgctgatgtt
gacaacagctccaatgtgaacaaaaactcttcgtctccggaacgcgaattgccaacgagt
ccttctcatcatgcgaataccgagatagattccagttcatctatgcttcctcctccatca
agtgatccattttcctcaccgctttctagcagcctacaccgatcatctcctaaacgccct
catgattctttgggcgaggagtcaccaggtaaattgcttcgcacgtctgtgaagcaagag
cccgactctgaagaagaaatcgattctccgacgaaaaagaaaagttttaaaagtttggat
acatcaatatttcaagctgaagatcaatttcgtcatcctgtctcgtcgaagctggaaaat
tcggaattatctgaagtcgacaagccttttatagcttctcggcgttcaaggaagcctgtt
tcctacgctgaaagtgatgaagacgaagacttcgacgatgcacctaccaaaggatctcgt
cataaaagaatcgtttctgatgacgaatcggatgactacgttgagcccgatcatatttcg
gaagcctcatctgaggcatccttgcctattgatgaagtcgaatctatggatgaggatgtt
gatggatattcagatcattccgtttctgtggctgctccaattcccaaaaaggaatctcga
aaggagagttccaattctttgtatgaaagttatcggctaggctctcaaattgccagtcca
agcccttcggtctcgggttctgcatctcccacaaaatcgaataaaaacggtgtcctgaac
agagaagaaaaaagaaggcaaagaatggaggcatttaaaaaagaaaacaacgaacgttac
gagtggttgctagatgttcgagatgctgatcaaaatcgagtgggtgatcctaattatgat
ccgcgcacattgtatatcccaccttcagcttgggcaactttcaagccatttgagaaacaa
ttttggaaaattaaaaaggaccttatggatacagttgttttttttcagaagggaaaattt
tatgagttatatgagaatgatgccgctatcggacatcaggtattttccttaaagttaact
gatagagttaatatgaagatggttggaattcctgaagcaagttttgattactgggcatct
caattcattgcaaaggggtatcgtatagctcgagtcgaccaattggaaaccgctttaggt
aaagaaataaaagatcgtcaacgaactcagaaggaagaaaaagtagttcagcgaggcctt
acccaagtcttaacgagcgggacccttgttgacgaggcaatgctgacttctgacttgtca
acatattgtatggctattaaagaaagtcttcaatctgacaacgaagagccttcttttggt
atctgcttcattgatacctcgactggtggttttcatatgtgtgaattcactgatgatatc
cacagaactaagcttgacactttattaacgcaagttcgccctaaggaactcatccttgag
aaatcaaaaatttctcaaaaatcgattagagcgataaaatactgtgtgtcttcatcttca
atctggaattttatcaagccgtatacggaattttgggataacgaacgagtcgagagagaa
attatagcaggagactatttcaaaaatggtttagaaggtgctccaaagatactaaagtcg
tatcttagtgaaaagcctctagccatcagtgcatttggtgctttattttggtatttacga
caattaaagttggataaggacatgtgttccatgggtaattttgacgaatatgacgcttct
cagcagtcaacttccctacttatgaatgggcagactttaaaaaatttagaaatattctct
aactcttttgatggtggatcggaaggcactttgtttcatttgctctgcagatgtgtcacc
ccttttggtaaacgtttatttcatacatggctttgtcatcctctaaggtccggtactgca
ataaatgcacgacttgatgttgttgagttaatagccgacaaccctgttattcgagatacc
atttgggggtttctacataaacttcctgacttggaacggttgatatcacgggtgcatgcc
ggaagaagtaaacccgcagattttgttcgagtattagaaggattccaacgaataaatagt
gcatttgatcagcttcgcgaggaattcatggaagtcgctgaaggaactttactaggagag
ataattcaaagtgcacctaacatgaaagaggaattagaagcatggacccgagctttcaat
tggcaaaaggcttcagaagaaggtgttttcgaaccagagattggctttgaagccgaatat
gatacttctcaaaaataccagtccgaacttaaaaacgaattgtatgcgcttttagagcaa
tacaagaagcagctaaggtgctcgtctcttaattttaaaaatattggtaaagaggtttat
caggtcgaagtcccaagcgatgttaaagtaccggttaattggtgcaaaatgtcaggtacc
aaaaaaaccaatcgatactataatgatgaactacgaaagaaaataaagaaattactagag
gcggaagagcttcatttagcaattatgtcgcgaatgcaggagaaattttatattcgattc
gattctaattatgagcaatggttggctttaattaaatatactgcatctattgattgcttt
ttcagccttagtcaagcagccgcagcgttgggtgagccatattgtagaccggaaattatt
gaacagaaggacggacacttgtattttgaggagttgagacatccttgtataaacgcaagt
gcggcttcaactttcgttcctaatgatgtcgttttaggaggtgaatccccaaacatgatt
gttttgaccggtccaaacatggctggaaagtccacattattgcgtcaagtctgtattgct
gttataatggctcaactagggtgctgggttccggctaaacgtgctagtataacacctatg
accagcatttacactagattaggtgccaatgatgatataatgtcggcacgaagtactttt
atggttgaactttcggagacaaagaaaattttggacgaatgtggacctaaaagtttggta
attttagatgaactaggtcgtggaactagtacttatgatggtcacgcgatagcttacgct
gtacttcatcatttggtttctaatattgggtgtttgggatttttttctacacattatcaa
agtctttgcgttgattttatgcatcatcgacaagtacgattgatgcagatggctgcagct
gttgatgaaaaaatcagacgtgtaacgtttttgtataagctggaagatggtatttgccct
aagtcttacggtatgaatgttgctagtatggccggcttacctgagaaggtaattgatgcg
gccgaagagaaggcctcggaacttgagcaagcgtctgccagcttcattaacgcaagcgat
gacattgctttaatgagtgatttccttcaagtgttgcgcatatcaaagtcaattgaacct
ttgacagcagtgaatatacctctcatacttgattcgtttgaataa
DBGET
integrated database retrieval system
