KEGG   Schizosaccharomyces pombe (fission yeast): 2539322
Entry
2539322           CDS       T00076                                 
Symbol
lsm8, SPOM_SPCC1840.10
Name
(RefSeq) U6 snRNP-associated protein Lsm8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018  RNA degradation
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    2539322 (lsm8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    2539322 (lsm8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    2539322 (lsm8)
   03041 Spliceosome [BR:spo03041]
    2539322 (lsm8)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     2539322 (lsm8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     2539322 (lsm8)
Spliceosome [BR:spo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    2539322 (lsm8)
SSDB
Motif
Pfam: LSM EDC3_N
Other DBs
NCBI-GeneID: 2539322
NCBI-ProteinID: NP_588509
PomBase: SPCC1840.10 SPCC1840.10.1
UniProt: O74483
Structure
LinkDB
Position
III:join(2277902..2277926,2277981..2278149,2278213..2278303)
AA seq 94 aa
MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLL
RGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH
NT seq 285 nt   +upstreamnt  +downstreamnt
atgagtcttgctgattttatggaacaaagggttcaagtcattacaaacgatggtcgcgtt
gtgctaggttccctgaagggattcgatcacacgaccaatcttatactttcagactcattt
gaaagaattattagcatggatcaagacatggaaacaattcctttaggcgtttatttatta
cgtggagaaaatgtagcaatggttggattagtgaatgaggaattagattcagaaatagaa
tggaccaaaattcgaggtgaagcaatacctgacgttgtgcattaa

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