Schizosaccharomyces pombe (fission yeast): 2539337
Help
Entry
2539337 CDS
T00076
Symbol
utp13, SPOM_SPCC16A11.02
Name
(RefSeq) U3 snoRNP-associated protein Utp13
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
2539337 (utp13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spo03009
]
2539337 (utp13)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
2539337 (utp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Utp13
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR41
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_Aladin
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_VPS8
Beta-prop_ACSF4
Ge1_WD40
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_WDR35_TULP_N
Tricorn_2nd
WDR54
Beta-prop_NOL10_N
Nbas_N
Beta-prop_WDR11_1st
PALB2_WD40
Vps16_N
Utp12
Motif
Other DBs
NCBI-GeneID:
2539337
NCBI-ProteinID:
NP_587989
PomBase:
SPCC16A11.02
SPCC16A11.02.1
UniProt:
Q9USN3
LinkDB
All DBs
Position
III:join(869701..869726,869764..872071)
Genome browser
AA seq
777 aa
AA seq
DB search
MAPIGEKKRFELEKSIEPIYTGGPVAFDSNEKILVTALTDRIIGTRSETGERLFSIKKDE
DDYVTALAITSDSKKLIAAFRSRLLTIYEIPSGRRIKSMKAHETPVITMTIDPTNTLLAT
GGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLASGADDSRVRLWDLNSSR
SMAVFEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWVN
GQPEEKILYTAGEGNLILAWDWKSGSRLDPGVDTTHSETNAIIQVVPFSENTLLSVHSDL
SLLLRKRVPGEGFITIKKLNGSFDEVIDCAWIGDDHLAVCSNTEFIDVISTDGTQVFGVL
EGHTDIVLTLDSSEDGVWLATGAKDNTVRLWNLNIEDNVYKCIHVFTGHTASVTAVALGP
LDVNGYPTFLASSSQDRTLKRFNLGSQLNKSDFSNRAVWTIKAHDRDVNAIQVSKDGRII
ASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQ
CVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASR
FDGSLLVSGGADAVVSVWKDVTEEYIAKQAEELERRVEAEQLLSNFEQTEDWQQAIALAL
SLDRPHGLLRLFERVMTAPHQPNSITGNKDVDNVLVQLPDHQLIILFQRIRDWNTNSKTS
MVAQRLLRLLLHSYSPEHLLKLSGIKDILDSMIPYTDRHLARVNDLIEDSYIVDYVI
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaattggggagaaaaagcgctttgagttagaaaaaagcattgagcctatttac
acgggaggtcctgttgcattcgactctaatgagaagattcttgttactgctttaactgat
cgtataattggaacccgtagtgagactggagagcgtcttttttctataaaaaaggatgag
gacgattacgttacagccttggcgataactagcgattcaaaaaaacttattgcggctttt
cggtcgagactacttactatttatgagattccttccggacggcgtataaaatcgatgaaa
gctcatgaaactccggtaattacgatgacaatagatcccactaatacattgttagctacg
ggaggtgctgagggattagtaaaagtatgggacattgctggagcatatgtaactcatagt
tttcggggtcatggcggtgtcattagtgcattatgctttggcaagcatcaaaatacttgg
gttttggcttctggtgccgatgattctcgagtcagattgtgggatttaaactctagtcga
tccatggctgttttcgaaggtcatagcagtgttattcgtggattgacatttgaaccaact
ggttcatttcttctcagtggatctagagataaaacggttcaggtttggaatattaagaag
cgttctgcagtcagaacgattcctgttttccatagcgtcgaggccataggttgggtcaat
ggacagcctgaagaaaaaattttgtatacagctggtgaaggtaatcttattttagcatgg
gattggaaatctggttcccgacttgatccaggtgttgatactactcattcagaaacgaat
gcaattatacaagtcgtaccattttctgaaaacacacttttgtctgtacattccgattta
agtctcttgttgcgtaagagagttcctggcgaaggctttattaccattaaaaaactcaac
ggatcttttgatgaagtcatcgattgtgcttggattggagacgatcatttggctgtttgc
agtaataccgagtttatagatgttatttccacagacggtacacaagtctttggggtgctt
gagggtcatactgatatagtccttactttggattcatctgaagatggtgtttggttggca
actggtgctaaagataatactgtgcgtctttggaatttaaacattgaagataatgtttat
aaatgtattcatgtattcactggtcatacggctagtgtcacggctgtcgctctgggacct
ttggatgttaatggttatcccactttcctggcatcttcctctcaagatagaacacttaaa
cggtttaatttaggttctcagctaaataagtccgatttttcaaacagagctgtgtggact
attaaagctcatgatcgtgatgttaatgctattcaagtttcaaaggatggacgaattatt
gcttcggctagtcaagataagactattaagctttgggattcatctacgggtgaagtggtt
ggtgttctgcgcggacatcgtcggggtgtgtgggcctgttcatttaacccatttagtcgt
caactcgctagtggtagtggtgatcgtacaattcgtatttggaatgtcgatactcaacag
tgtgtgcaaactttagaaggtcatacaggtgcaatactgaaactgatctacatttctcaa
ggaacccaagtcgtaagtgctgctgccgacggtttggtcaaagtgtggtcgttgagctct
ggtgaatgtgttgctacgctcgacaatcatgaagaccgtgtgtgggctttagcttcaagg
ttcgacgggagtttgttggtttctggaggtgcagatgcagtagttagcgtttggaaagat
gtaactgaagaatacattgccaaacaagctgaggaattagagcgtcgtgttgaggctgaa
cagctcttatcaaattttgagcaaacagaagactggcaacaggctattgctttagctttg
tcattagaccgtcctcatggacttttgcgactgtttgaacgagttatgacagctccacat
caaccaaatagcattactgggaataaagatgtggataatgttttggttcagcttccggat
catcaattaataatcttgtttcagcgcattcgtgattggaatactaatagtaaaacaagc
atggttgctcaaagattgctacgtcttttattacattcatactcccctgaacaccttctc
aaattatctggtattaaagatattttagattctatgataccgtatactgatcgtcatctt
gcaagagtcaacgatctcattgaggattcctatatagtggattatgttatttaa
DBGET
integrated database retrieval system
