Schizosaccharomyces pombe (fission yeast): 2539351
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Entry
2539351 CDS
T00076
Symbol
csl4, SPOM_SPCC1840.11
Name
(RefSeq) exosome subunit Csl4
KO
K07573
exosome complex component CSL4
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2539351 (csl4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2539351 (csl4)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
2539351 (csl4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
2539351 (csl4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
S1_RRP4
ECR1_N
PCB_OB
Motif
Other DBs
NCBI-GeneID:
2539351
NCBI-ProteinID:
NP_588510
PomBase:
SPCC1840.11
SPCC1840.11.1
UniProt:
O59821
LinkDB
All DBs
Position
III:2279333..2279878
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AA seq
181 aa
AA seq
DB search
MNLVLPGQVVARGAPNGEGTVKRGDYIISTRTGIFDPEKNSVTYPRKVEETAVLPNVGSI
VLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVRA
LVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTKSGYTEMRKCAKPILD
E
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgaatttggttctccctggacaggtggtcgcgagaggggctcctaacggtgaaggaacg
gtaaagagaggagattatattatttccacacgaactggcatctttgatccagagaaaaat
tctgtaacgtacccaagaaaagttgaagagacagccgttttacctaatgtcggatctatt
gttttagctcgcgtcagcaggatcaatgctcgtcaagcaactgtaaacatctcagtcgtt
gacgatgtctgcaccaaagatgaatttcaaggggtaatacatgtgcaggatattagagct
actgagaaaaataaagtcaaagtgcaaaattcattccgaccgggtgatattgtcagagca
cttgtaatttcacttggagacggctcttcgtactttttaacaacagctcgaaatgatctt
ggtgtgatttttgctcagtctagtgaaacaggagagcaaatgtttccggtggattatcag
catatgcaaacaaaatcaggatatacggaaatgcgtaaatgtgctaaacctatattagac
gaataa
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