Schizosaccharomyces pombe (fission yeast): 2539623
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Entry
2539623 CDS
T00076
Symbol
ufd1, SPOM_SPBC16A3.09C
Name
(RefSeq) Hrd1 ubiquitin ligase complex subunit Ufd1
KO
K14016
ubiquitin fusion degradation protein 1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
2539623 (ufd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spo03009
]
2539623 (ufd1)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
2539623 (ufd1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UFD1_N1
UFD1_N2
Spa1_C
Motif
Other DBs
NCBI-GeneID:
2539623
NCBI-ProteinID:
NP_596780
PomBase:
SPBC16A3.09c
SPBC16A3.09c.1
UniProt:
O42915
LinkDB
All DBs
Position
II:join(4282154..4282156,4282204..4282372,4282553..4282585,4282642..4282763,4282812..4283513)
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AA seq
342 aa
AA seq
DB search
MFGGSFFSSDDDGFSMMSQLRSAFHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVIL
PPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGD
LVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQ
IKVIDVQPDDSRHVVSVVETDLVVDFDPPIGYEESLQKNKQQNIAGVQGTMVTKIGYDEL
VRQGDSNLMKGTGTKLNGKEVAEVPKINLLDVEKQECPAPLILPLGTYFFGYPYKAPSIE
EDSKKDPNLFKFEGAGTSLRASRKTNGTMGKGSSDDPIDIDA
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtttggcggcagctttttctcaagcgacgatgatggtttctccatgatgtctcaactt
cggtcagcttttcataataatgtaaatcagcgatttgatactcgttaccgctgttatcct
gttgccatgattcctggtgaggaacggccaaatgtcaattatggtgggaaagtaatatta
ccaccttcagctttagaaaaactatcacgcctgaatgtcagttatcccatgctttttgac
tttgaaaacgaagctgcagagaaaaaaactcatgggggtgtgttagaatttattgcggaa
gagggacgtgtctacctgccttattggatgatgactacacttagccttgagcctggagat
ttggttcgagttataaatactgatatagcacagggcagctatgtcaaattacagcctcaa
agcgtgaattttcttgatatcacggaccacagagcggtattggaaaatgcgcttaggaat
ttcagtacgcttacaaaatctgatatatttgagattttgtataacgaccaggtatatcaa
ataaaagttatagatgttcaacctgatgactcccgccatgttgtctcagtggtagaaacc
gatttggtagttgattttgatccccccatcggttatgaagaaagtttgcaaaaaaacaag
cagcaaaatattgctggcgttcaaggaacgatggttaccaagattggttacgatgagctg
gtgaggcagggcgattcgaatttgatgaagggaacagggactaaactaaatggtaaagaa
gttgctgaagtgcctaaaataaatttgctcgatgttgagaaacaagaatgtcctgctccg
ttgatcctaccattgggtacatacttctttgggtatccttataaagcaccctctattgaa
gaagattctaagaaagaccccaatttatttaagtttgaaggtgccggtacatctctacgt
gcctctcgcaaaacaaatggaacaatgggaaaaggttcctctgatgacccaatcgatatt
gatgcttaa
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