Schizosaccharomyces pombe (fission yeast): 2539660
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Entry
2539660 CDS
T00076
Symbol
rrp46, SPOM_SPBC115.01C
Name
(RefSeq) exosome subunit Rrp46
KO
K12590
exosome complex component RRP46
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2539660 (rrp46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2539660 (rrp46)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
2539660 (rrp46)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
2539660
NCBI-ProteinID:
NP_595260
PomBase:
SPBC115.01c
SPBC115.01c.1
UniProt:
O42894
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All DBs
Position
II:join(639374..639428,639512..640137)
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AA seq
226 aa
AA seq
DB search
MNRIGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLE
KMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKY
IPCAINCHWKNKITQDEPDVDGTINKLESIITICYSISSEPAKLIFLETAGPIPEEDFFR
VLETAPLHAEEVSKKMKELLFETYNESDGHENEKNPKEDVEMDVVA
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtataggtatcctctcaaggtctgatggctcgagcgaatggaaacaaggttct
gctagggttatttgtggtgtcaatggtcctattgatgtaaaaatcagggacgaaaggctt
aacaaggccaccgttgaagttttggttcaacctgtgagtggtgtcgctgagactttggaa
aagatgatttctagcagaattgttggtatcctagaagatgcaatatttctaaacacatat
ccaagaacacttatacaagtgtcaattcagataatagaggaagatggcacagatacattg
gctgccgtaatcaatggtgcggtacttgctttattggacgcaggtatctctttaaaatat
attccctgtgcaataaattgtcactggaagaacaaaataactcaagatgaacctgatgtc
gatgggacaattaacaaattggagtctattattactatttgttattcaatttcctcagaa
ccagccaaattaatttttctcgaaacagctggccccattccagaagaagattttttccgt
gttctggagacagcaccattgcatgccgaggaagtttctaagaaaatgaaagaattgctt
tttgaaacgtacaacgagagcgatggtcatgaaaatgaaaagaaccccaaagaggatgtt
gagatggatgtggttgcataa
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