Schizosaccharomyces pombe (fission yeast): 2539741
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Entry
2539741 CDS
T00076
Symbol
rae1, SPOM_SPBC16A3.05C
Name
(RefSeq) nucleoporin Rae1
KO
K14298
mRNA export factor
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
2539741 (rae1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2539741 (rae1)
03036 Chromosome and associated proteins [BR:
spo03036
]
2539741 (rae1)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
2539741 (rae1)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
2539741 (rae1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WDR55
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
WD40_like
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
2539741
NCBI-ProteinID:
NP_596784
UniProt:
P41838
LinkDB
All DBs
Position
II:join(4288945..4289016,4289067..4289143,4289563..4290472)
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AA seq
352 aa
AA seq
DB search
MSLFGQATTSTVSNATGDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQ
ATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVFDIQTGQNQQVAAHDDAVRC
VRFVEAMGTSPILATGSWDKTLKYWDLRQSTPIATVSLPERVYAMDCVHPLLTVATAERN
ICVINLSEPTKIFKLAMSPLKFQTRSLACFIKGDGYAIGSVEGRCAIQNIDEKNASQNFS
FRCHRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTIS
CSTFNRTGDIFAYAISYDWSKGYTFNNAQLPNKIMLHPVPQDEIKPRPKKGR
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgtcactttttggacaggctacaacatctacagtatctaatgcaaccggtgacttaaaa
aaggatgtggaggttgcccaacccccggaggattcaatatcagatttggctttttctcct
caagcagaatatttagctgcatcatcttgggatagtaaagtccgtatttacgaagtgcaa
gctacagggcaatcaattggaaaagcactttatgaacaccaaggtccggtattaagtgtc
aattggtctcgagatggtaccaaagtagcatcaggaagtgtggataagtctgctaaagtc
tttgatattcaaacggggcaaaatcagcaggttgcggctcatgacgatgctgttcgttgc
gttcgtttcgttgaagctatgggtacttcacctattctggcaactgggtcatgggacaaa
accttgaaatattgggatcttcgacaatcaacacccattgctacagtcagtcttccagaa
cgtgtttatgcgatggattgtgttcatccattacttaccgttgcaaccgctgaaaggaac
atatgtgttatcaacttgtcggaaccaacgaaaatatttaaactggctatgagtccattg
aagttccagacaagatctttggcttgttttattaaaggtgatggttatgctataggaagc
gttgaaggaagatgtgcgatccaaaatatagatgaaaaaaatgcatctcaaaacttcagt
tttcgctgtcataggaatcaagcaggtaacagtgctgatgtttacagtgtaaattctata
gcatttcatccccaatatggaactttctcaaccgccggatctgatggtacttttagtttt
tgggataaagatagtcatcagcgtttaaagagttatccaaatgttggtgggactatttct
tgcagcacgtttaatcgtactggagatatttttgcttatgccattagttacgactggagt
aaaggttatacattcaacaatgcgcaattgcccaataaaatcatgctccaccctgttccg
caagacgaaataaaacctcgacctaagaaaggaaggtaa
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integrated database retrieval system
