Schizosaccharomyces pombe (fission yeast): 2539900
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Entry
2539900 CDS
T00076
Symbol
hrd1, SPOM_SPBC17D11.02C
Name
(RefSeq) synviolin family ubiquitin-protein ligase Hrd1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo04120
Ubiquitin mediated proteolysis
spo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
2539900 (hrd1)
04120 Ubiquitin mediated proteolysis
2539900 (hrd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spo04121
]
2539900 (hrd1)
Enzymes [BR:
spo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
2539900 (hrd1)
Ubiquitin system [BR:
spo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
2539900 (hrd1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-RING_16
zf-C2H2_ZN292
FtsL_2
CCDC113_CCDC96_CC
DUF7310
Prok-RING_4
zf-C3HC4_4
STX6_10_61_N
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
2539900
NCBI-ProteinID:
NP_596376
PomBase:
SPBC17D11.02c
SPBC17D11.02c.1
UniProt:
O74757
LinkDB
All DBs
Position
II:complement(join(3306554..3308563,3308607..3308630))
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AA seq
677 aa
AA seq
DB search
MKFILYVLASLVLFGLSVLLSLYSSANVYSATVMISQSPVHITIGLNVCLCLFFAIANAL
KTLLFGSLQTFELELLYEQFWITLTEIMLAITVFREAISISFFMLLSTLMFARVFHSICS
FRTERLQIQLTDQRFHIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSV
LLLNLTIEASKLCIYLYEARHLDQVWDEKSTYLFRLEVCRDGLRLLAYSLLFMYQFPYVS
VPIYSIRQMYTCFYSLFRRIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMF
HPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICRRSVIGNQSS
PTGIPASPNVRATQIATQVPNPQNTPTTTAVPGITNSSNQGDPQASTFNGVPNANSSGFA
AHTQDLSSVIPRRIALRDGWTMLPIPGTRRIPTYSQSTSTTNPSATPTTGDPSNSTYGGP
QTFPNSGNNPNFNRGIAGIVPPGWRLVSSNTQSLSTNSAMTSLYQNASSADNNLGSSLPN
VVPLSRGLTQSNETSNTFPAASSNISSQLRELHTKIDELRETVSNFRADYNSIRTSLNQL
EAASGINERIQTTSADSLLNSNGMSGTEGFENTQTSITTNDNQSSILTSSDQTSPFATDE
DRQNSRNVQLETVDENF
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttatactatatgtgttagcttccttggtgctgtttggactgtcagtcttgttg
agtttgtacagtagtgcaaacgtgtactcggcgacagtaatgatttctcaaagtcctgtt
catataacaattggactgaacgtttgtttatgtctgttttttgcgattgccaatgcctta
aaaacattattgtttggttcgcttcagacattcgaacttgagcttttatatgaacaattt
tggataacccttactgaaataatgcttgcgatcactgtttttagagaagccatatctatt
tctttctttatgttgttaagtactttgatgtttgctcgggtgtttcattccatatgttct
tttcgcacagaaagattgcagattcagcttacagatcagcgttttcatattttcagtcgc
ctaacttgcgcatactttgtactttctatactggatgcatctcttatttacctttgtttt
acgagcgagcatcttggcgataaatcgacacgtatgcttttcgtatgtgaattctcggtc
ctccttttaaatctcacaattgaggcatctaagctttgcatatatttgtatgaggctaga
cacctcgatcaggtttgggatgaaaaaagtacttatcttttccgacttgaggtttgtcga
gatggtttacgccttcttgcatacagccttttattcatgtatcaatttccctatgtctca
gttcctatttattccatccgtcaaatgtacacatgtttttactcgttgttcaggcgtata
cgtgagcatgcgcgtttccgacaagcaactcgcgatatgaacgccatgtatccaactgct
actgaagaacagcttacgaattcagatagaacatgtactatttgtagggaagaaatgttt
catccagatcatcctccagaaaacaccgacgaaatggaacctctacctagaggtttagat
atgactcctaaacggcttccctgtggccatattttacatttccattgccttagaaattgg
ctagaaagacaacaaacatgtccaatttgtagaagatccgttattggaaatcaatcttcc
ccaacgggaattcctgcaagtcccaatgttcgagctactcaaatcgcaacccaagttcct
aacccgcaaaacactcctaccacaactgcagtaccaggcatcactaactcttctaatcaa
ggagaccctcaggcatcaactttcaatggagtgccaaatgcgaatagtagtggatttgca
gctcatactcaagatctttcgtcagtgatcccaaggagaattgccttacgtgatggttgg
actatgcttccaattcctggaacgcgtcgtattccgacttattctcaatccacatcaacg
acaaatcctagtgctacgcctactactggggatccatcgaattccacgtatggtggccct
caaacatttccgaattctggaaataatccaaactttaaccgtggaatagcaggaattgtc
cctccgggatggcgactagtatctagcaatactcaatctctatctaccaactcagcaatg
acatctttatatcaaaacgcatcatcagcagataataatcttggctcctctttacccaac
gttgtaccattgagtagaggattaacacagtcgaatgaaacgtctaatacgtttcccgct
gcttcatctaatatatcttctcagcttcgtgaacttcataccaaaattgatgaattacga
gaaacggtttctaactttcgtgctgattacaatagtatacgtacatctttaaatcagtta
gaagctgcaagtggtattaatgaaaggatacaaactacttctgctgattcactattaaat
tccaatggtatgagtgggactgaaggatttgagaatacgcagacttccattacaacgaac
gacaatcaatcatcgatcttaaccagttcagatcaaacatccccatttgcaactgatgaa
gatcgacaaaactcacgaaatgtacaattagaaactgtggatgaaaatttttga
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