KEGG   Schizosaccharomyces pombe (fission yeast): 2539984
Entry
2539984           CDS       T00076                                 
Symbol
spf38, SPOM_SPBC1289.11
Name
(RefSeq) U5 snRNP complex subunit Spf38
  KO
K12857  Prp8 binding protein
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    2539984 (spf38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:spo03041]
    2539984 (spf38)
Spliceosome [BR:spo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    2539984 (spf38)
 Complex C
   U5 SnRNP specific factors
    2539984 (spf38)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_HPS5 Cytochrom_D1 Beta-prop_LRRK2 WD_LRWD1 mit_SMPDase
Other DBs
NCBI-GeneID: 2539984
NCBI-ProteinID: NP_596835
PomBase: SPBC1289.11 SPBC1289.11.1
UniProt: O94620
Structure
LinkDB
Position
II:join(4404561..4404605,4404647..4404751,4404790..4404862,4404912..4405171,4405217..4405460,4405522..4405817)
AA seq 340 aa
MDKRKESESATNGHLVKRIRIQDSSLITEGSVLQRTSDLNVPNLQMFGHTAEVLVARFDP
SGSYFASGGMDRQILLWNVFGDVKNYGVLNGCKGAITDLQWSRDSRVVYCSSSDTHLMSW
DAVSGQKIRKHKGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEKYPL
TAVAIAQQGTQVFIGGIDGAIKIWDLRNNHCSHVLKGHKDIITSLAISKDGSSLLSNSMD
NTVRIFDVKPFASAQRQLQIFEGAIHGQEHNLLGVAWSRNSRFVGAGSSDKNVYVWSATG
DLRYVLPGHEGSVNHVDFHPHQDIILSCSSDRTIFLGELN
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggataaacgaaaggaatcggagagtgcgactaatggacatttagttaaaagaattaga
atccaagattctagcttaataacggagggttctgtattgcaacgaacatctgatctcaat
gttccaaacctacagatgtttgggcatacggctgaagttttagtcgccaggttcgatcct
tctggatcatactttgcttctggcggtatggatagacagatacttctttggaatgtgttt
ggtgacgttaaaaactacggagtattaaatggctgcaagggagccataactgatttacag
tggagcagggattcacgcgtagtttactgttcttcctccgatacacacctcatgtcttgg
gacgctgtctctggtcaaaaaatccggaagcataaaggccacgctggcgtggtgaatgct
ttagacgttttaaaagttggttccgaacttctgacttctgtaagtgatgattgtactatg
aaggtatgggactcgcggtcaaaagactgcataaaaacaatagaagaaaaatatccctta
acggctgtcgcaatagcgcagcaaggaacccaagtttttatcggtggtattgacggagct
attaaaatctgggatttacgaaacaatcactgctcgcatgttctgaaagggcataaagat
atcattactagtttggctatatctaaagatggatctagcttactttctaattctatggac
aacacggttcgaatatttgatgtaaaaccttttgcttctgctcaacgacagttgcaaatt
tttgaaggagctattcacggacaggagcataatttgttaggtgttgcctggagtcgtaat
tcacgattcgttggtgctggtagctctgataaaaacgtatatgtttggtcagccacaggc
gatttacgttatgtattacccggacatgagggttcagtaaatcacgttgactttcatcca
catcaggacatcattctttcatgttcctcagatcgaacaatatttcttggggaattgaat
taa

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