Schizosaccharomyces pombe (fission yeast): 2540006
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Entry
2540006 CDS
T00076
Symbol
prp16, SPOM_SPBC1711.17
Name
(RefSeq) ATP-dependent RNA helicase Prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2540006 (prp16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spo03041
]
2540006 (prp16)
Enzymes [BR:
spo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
2540006 (prp16)
Spliceosome [BR:
spo03041
]
Complex C
Other components
Step II factors
2540006 (prp16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
SRP54
AAA_19
Flavi_DEAD
SLFN-g3_helicase
nSTAND3
AAA_30
T2SSE
ATPase
ABC_tran
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
2540006
NCBI-ProteinID:
NP_595890
PomBase:
SPBC1711.17
SPBC1711.17.1
UniProt:
Q9P774
LinkDB
All DBs
Position
II:2166259..2169780
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AA seq
1173 aa
AA seq
DB search
MLSHNQNDLLFTKLIDKLTDYMSSKDAATSLASRVLTIAKGSSSSTEFSNALHTFGRFSD
NDSVLIYDLCKSIIGLETNLGISKDKLPGNDGSQVAGLVLSNRSGLKGREPKKSQLGLDV
LAVQKKKEKSQVEGRSELSQVENDSLESIGNYDRVEFKRPKNPHEKHFRPLRQRSSVDDH
QEFESEDDKYRRNSYSSWSGSNFESSNGSNRRRYRTQMEEPLSSKRRNRFGNGSRRDVDS
SKYSHDSDYSYGAHSSWDARDVEYPEEDPESKADRQRWEEEQAHLDRDWYMNSESQNLLG
DEVHNPFSDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKAPGL
ESDYSLMEERRVHLLVDELRPHFLDGAEFSSKKVGDITSVRDPQSDLAINARLGSRLVRE
RREFRERQKAASAATSLAGTSLGNVMGLKDSNDEDAKAGTTPVKVAGRSEQSNKKDTEFA
RTKSYREQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMI
GCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQ
NNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAP
QFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEII
ADRLNQLHDAPRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYV
VDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFE
TTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLT
TLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESDAAREK
FNVPESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLE
SVSDWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHE
LVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKERFRNETESYDRVFSSKPQLDAQIAADRE
LDAKQKLAKNQEPVKSKRKSVIRAKPPRRVRGF
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgctttcacataatcaaaatgatttgctatttacgaagttaatagataaattaactgat
tatatgtccagtaaagatgcagctacatcgcttgccagtcgagttttgacaattgccaag
ggtagctcgtccagcaccgagttttctaatgcattacatacatttggacgattttccgat
aatgacagcgtccttatttacgatttatgcaaatctataattggtttagagacaaatttg
gggatttctaaagataaacttcctgggaatgatgggtctcaggtagctggattagttttg
tctaatcgttctggtttgaaaggccgagaacccaaaaaatcccagcttggattggatgtt
cttgctgttcaaaaaaagaaagagaaatctcaagtagaagggcgctctgaattatcccaa
gtagaaaatgattccttggagtctataggaaactatgacagggtggaatttaagagacct
aaaaatccacatgaaaaacattttcgtccccttcgtcaacggtcatctgttgacgatcat
caagagtttgaaagtgaagatgataaatatcgtagaaattcttattctagctggtctgga
agtaatttcgagtcttccaatggatctaatcgtcggcggtatcgaactcaaatggaagaa
cctttatcctcaaaacgcagaaatcggtttggtaatggttctcgaagagacgtcgatagc
tctaaatattcgcacgatagtgattattcttatggtgcacacagctcttgggatgcccgc
gacgttgagtaccccgaagaagatcccgagagtaaagctgatcgtcaacgttgggaagag
gagcaagctcacttggatcgtgattggtacatgaattccgagtcgcaaaatttacttggc
gatgaagttcacaatccattctccgattttgaaactgtcgaagatcgtgcacatgaagct
gagtttatcgaaaagcagaaaaagcatttgtcaattgaagcatcagacagatttaaagaa
aattctatgtgggaaaaaaatagaatgatcacatctggtgtttcaaaagctccagggctc
gaatctgattactcccttatggaagagaggcgtgttcacttgcttgtcgatgaactgcgt
cctcattttttggatggggccgaattttcttctaagaaagtcggtgatattacatcggtt
cgagatccacaaagcgaccttgcaataaatgctagattaggatctcgtcttgtacgtgaa
cgaagagaatttcgggagcgtcaaaaagcagcaagtgctgctacatcccttgctggtaca
tctttgggtaacgtgatgggtctcaaagattctaatgatgaagatgccaaggccggtacc
acacctgttaaagtagctggacgttctgaacagtcgaataagaaggatactgagttcgct
cgcacgaaatcatatagagaacaaagagagttcctacctgcctttgccgtgcgtgaacag
cttctttctgttatacgtgataaccaagttcttattgtagttggtgagactggttctggt
aaaactacccaattagctcaattcttatatgaggatggctatcatagaaatggcatgata
gggtgtactcaacctcgtcgtgtcgccgccatgtcagttgcaaaaagggttagtgaggaa
atgggtgttcgtctaggttcaacagttggttattcaattcgtttcgaagatgttactgga
ccggataccgtaattaagtacatgactgacggtgttttactaagagaatccttgatgcaa
aataatctagaaaaatatagcgtcattataatggatgaagcacatgagcgatcccttaat
acagatattttaatgggtttactaaaaaaggtgttatccaggagaagagatatcaagttg
ctcgttacatccgctactatgaattcccagaaattctctgatttttttggaggcgcccca
cagtttacaattccaggtcgtacttacccggtggatattatgtttgctaaagccccttgc
tctgattacgttgaagcagctgtacgacaggtattgcagattcacctctctcagcctgca
ggtgatatcttagtttttatgacagggcaggaagatattgaagctacatgcgagatcatt
gcagataggttaaatcagttgcatgatgcaccacgcttgtccattttgcctatctactca
caaatgcctgcggatttacaagcaaaaatttttgattccgccgagccaggtgttagaaag
gttgtggtcgcaactaatattgcggaaacttcgctcactgtgcacggaatatcatatgtt
gtagatactggatattgtaaactgaaaatgtataattctaagttgggtattgatactctg
caagttacacctatttcgcaagctaatgcgaatcaaagagccggtcgtgctgggcgtact
ggacccggtattgcatatcgcctttataccgaaatggcttatattcgtgaaatgtttgaa
acgaccttacctgaaattcagcgtaccaatctatcaaacacagttcttattttaaaatcc
cttggtgttgaagaaatttcggattttgatttcatggaccgtcctccaaatgatacgtta
atggcatctctgtatgaattatggactttaggagccctcgacaattttggaaaacttact
actttaggaaagaaaatgtcgttatttccaatggatccttctctttcaaaacttattatt
attgctgaagattataaatgtactgaggaaattattacgattgtttccatgctttcagtt
ccgtctgtattttatagacccaaggaaagagctgaagagagtgacgctgcaagagaaaag
tttaatgtgccagaaagtgatcatttaatgctactcaatatttatcagcattggcaaaga
aatggatattcaaattcatggtgcagtaaacattttttacactcgaaaactcttaaacgg
gcgcgcgatattcgtcaacagctggtcgaaattatgtcaaagcaaaagattagtttagaa
tctgtatccgattgggacattgttcggagagttttgtgttctgcgtactttcatcaagca
gcatgcgctaaaggtattggggagtatgttcatttacgaagcggcatgccttgccatcta
catgttacttcgagtctttatggcttagggtatctacctgattatgttatatatcacgaa
cttgtactcacttccaaggagtacatgaatattgtcaccagtgttgatccatactggcta
gctgagtttggtggagtttactactctgtgaaggaaagattccgaaatgaaactgaaagc
tatgatcgagttttttctagcaaacctcaattggatgcacagatagccgccgaccgagaa
cttgatgcaaagcaaaagcttgcgaagaatcaagaacccgtgaaatcaaaacgaaagtca
gtgatacgtgccaaacctcctagaagggttcgtggattttaa
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integrated database retrieval system
