Schizosaccharomyces pombe (fission yeast): 2540057
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Entry
2540057 CDS
T00076
Symbol
prp43, SPOM_SPBC16H5.10C
Name
(RefSeq) ATP-dependent RNA helicase Prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2540057 (prp43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spo03041
]
2540057 (prp43)
03009 Ribosome biogenesis [BR:
spo03009
]
2540057 (prp43)
Enzymes [BR:
spo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
2540057 (prp43)
Spliceosome [BR:
spo03041
]
Complex A
U2 snRNP components
U2 related factors
2540057 (prp43)
Complex B
2540057 (prp43)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
2540057 (prp43)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
90S particles
Helicases
2540057 (prp43)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
SRP54
AAA_19
Cas3-like_C_2
nSTAND3
Flavi_DEAD
AAA_23
Microtub_bd
NB-ARC
Motif
Other DBs
NCBI-GeneID:
2540057
NCBI-ProteinID:
NP_595937
UniProt:
O42945
LinkDB
All DBs
Position
II:2279763..2281970
Genome browser
AA seq
735 aa
AA seq
DB search
MEPAQKKLRQESKNPYLAHLNNGDDSEEVVSSKGLTRRATTVAQAAKAEEGPNNFFNDKP
FSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHL
TNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLR
EAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKY
FFDAPLLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIED
ACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNI
AETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR
LYTEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEEL
NYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVRP
NSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQ
LRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLH
PSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDFDNNKEVKSALQ
KVYQMAARSKKNARR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagctcagaagaaactaaggcaagagtcaaagaacccgtatttggcacactta
aacaatggtgatgattctgaggaagttgtttcttcgaaagggttgacgcgacgtgctacg
actgttgcacaagcagctaaggctgaagaaggaccaaacaatttttttaatgataaacct
tttagtcaaaattattttaagattttggaaactcgaagagagcttcctgtataccagcaa
agagaagaatttctcaaaatttatcacgagaatcaaattattgttttcgttggtgaaact
ggttctggtaaaacaacacaaattcctcagtttgttctttatgatgaattgcctcattta
acaaatacacaaattgcatgtactcaaccacgtcgtgttgcagctatgtccgttgcaaaa
cgtgtcgctgacgaaatggacgttgacttgggcgaggaagttggttacaacattcgtttt
gaagactgtagtggacctaacactctgttaaaatatatgacagatggtatgcttttgcgt
gaagccatgacagaccatatgctctctcgttattcttgtattattcttgatgaagcacat
gagcgtaccttggcaactgatattttgatgggtctaatgaagcgtttggctacacgtaga
cccgaccttaagattattgtcatgtctgcaactttggatgctaaaaagtttcaaaaatac
ttttttgatgctccccttttagctgttccaggtagaacttaccctgttgaaatttattat
acccaagaacctgagcgcgattatttagaagccgcgcttcgtacagtgcttcaaattcat
gttgaagagggccccggtgatatcttagtgttccttacaggtgaagaagagattgaagat
gcttgccgtaagattactttggaagctgatgatcttgtacgtgaaggagccgctggtcca
ttgaaggtgtatccactttatggttctttaccgccaaatcaacagcaacgtatattcgaa
ccaactccggaagatacaaaatcgggttacggccgtaaagtagttatatctacaaacatc
gcagaaacatccttaactatcgatggtatcgtttatgtggtggatcctggttttagtaaa
caaaaaatttataatccccgaatccgagttgagtctttgcttgtaagtcctattagcaaa
gccagtgcacaacagcgtgctggtcgtgctggacgtactcgacctggtaaatgtttccgc
ctttacacagaggaagcttttcgcaaagaattgattgagcaaacgtatcctgagatttta
cgcagcaatctctcgagtactgtcttagaattgaagaaactaggtattgatgacctcgtt
cattttgattatatggatccacccgctccggagactatgatgcgtgctttagaagagctg
aactatttgaactgtctggacgataatggcgacttgactcctttaggtcgtaaagcgtct
gaattcccacttgatccaaatttggctgtaatgcttatcagaagtccagagttttattgc
tcaaacgaagttttatctttaacagctcttttatctgttcctaatgttttcgtcagacct
aactctgcaaggaaattagcggatgagatgcgacaacaatttactcatcctgatggtgat
cacttgaccttattgaacgtttatcatgcttataaatcaggtgaagggactgctgactgg
tgttggaatcatttcttgtcgcatagagcgctaatcagtgctgacaatgtaagaaaacaa
ttgcggaggacaatggaacgtcaagaggttgaactcatatctaccccttttgatgacaaa
aactactatgtaaatatccgccgtgctcttgttagtggatttttcatgcaagttgccaaa
aagtctgcaaatggtaaaaactatgtgactatgaaagataatcaagtggtttcactgcat
ccttcatgtggtttgtcagtgactccagagtgggtggtttataatgaatttgtacttact
accaaaagttttattcgaaatgtcacagctattcgtcctgaatggttaatagaactagct
cccaattactatgatttggatgatttcgacaataataaagaagtcaaatcagcactccaa
aaagtatatcaaatggctgctagatcaaaaaagaacgctcgacgttaa
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