Schizosaccharomyces pombe (fission yeast): 2540231
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Entry
2540231 CDS
T00076
Symbol
ppk26, SPOM_SPBC336.14C
Name
(RefSeq) PAN complex subunit Ppk26
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2540231 (ppk26)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540231 (ppk26)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
2540231 (ppk26)
mRNA degradation factors
3'-5' decay
Pan complex
2540231 (ppk26)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
PK_Tyr_Ser-Thr
Det1
Tox-ART-HYE1
APH_6_hur
Motif
Other DBs
NCBI-GeneID:
2540231
NCBI-ProteinID:
NP_596134
PomBase:
SPBC336.14c
SPBC336.14c.1
UniProt:
Q9UST1
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Position
II:complement(join(2765320..2765367,2765474..2765551,2765599..2766130,2766211..2766436,2766474..2766584,2766630..2766779,2766822..2766966,2767006..2767101,2767155..2767311,2767357..2767397,2767457..2767551,2767600..2767690))
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AA seq
589 aa
AA seq
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MSVRKNSPASPKPTSRSRESSRSPSVTDLKDHSKAKRTLCRNILLYGSCKHSENGCAFRH
DGPFIPSSENLEQYSVKKKLNAASASFQPVRALPVKAAGAAVFVPKSQEKSLFLSRERTP
VALSPGSHAINPYNNASMLVNEPFHDDSGVYYTRQNQFKPTLYNLYNPQPSPMPTLLPYE
RTVNGLFIDDTTRERIERKSEASRQTISALPSIISSYTSLAPLNTKLYRYKEQIGFSSWT
YKCTSSIDGNAYVLKRLQDCSINIDTSTVDKLKNVFHPNIVPFHSAFHTDTFHDSSLLLI
YDFYPCTTTLGELYLNNSKNSVKLEENRKIPERELWNYFFQLTIALSYLHKSGFACNKLT
PSRILVDQTERIRISGCADYELVVSNKPPLEERKKQDFVDLGVVIANLATGRTDMDMSSA
ARAIYSTYSREFYKAVLYFVSEVPEDKNLELFLQNHIESFFPIMSSPYVECEKMERKISD
AFQHGRFFNILCKIMFIIDNNRASREYPIAREKEISLIYLLRDYLFHQIDEDECPVIDLY
QVLNRLGKLDAGINQAIALISRDELDCVSVSYGELKAWLDNVYEMEINS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaggaagaattctcctgcaagcccaaagccaacttcccgttctagggagagt
tccaggtctccgtcagtgactgatttgaaagaccattccaaagctaaacgaacattatgt
agaaatatcttactttatggatcctgtaagcattcagaaaatggatgtgcttttcgacat
gatggtcctttcatcccttcttcagagaatttggagcaatactcagttaagaaaaaactg
aatgctgcgtcggcctcttttcaacctgttcgcgctttaccagtaaaggctgctggcgct
gcagtatttgttcctaaatcacaagaaaaatctctttttctatctagagagcgtacccct
gttgcgctttcaccaggtagtcatgctattaatccttacaataatgcatctatgttggtc
aatgagccttttcatgatgactctggggtttattatactcgtcaaaaccagtttaaaccc
acattgtacaatttatataatccgcaaccttctcccatgccaactttacttccttatgaa
agaactgtaaacggtctatttattgatgatacgactagagaaagaatcgagagaaagagc
gaggcatcccgtcagacaatttcagcgcttccgtctattatatcttcatatacttctttg
gcgccactgaatacaaagctttatcggtataaagagcaaattggattctcttcttggacg
tacaaatgcacttcttccatcgatgggaatgcttacgttttgaaacgactccaagactgt
tcaattaatattgatacgtcgactgtcgacaagcttaaaaatgtttttcatccaaatatc
gtaccattccattctgcttttcatactgatacatttcatgattcttcgttactattaatt
tatgatttttatccgtgtactacaacccttggtgagctctacctaaacaattctaaaaat
tctgtcaagttggaggaaaatagaaaaattccagaacgagagttatggaattattttttc
cagcttactatcgctttgtcatatctacataaatccgggtttgcttgcaacaagcttact
ccgtcgagaatccttgtggatcaaactgaaaggattcgtattagtggttgcgctgactat
gaattggtagtgtcaaacaagcctccattagaggaacgaaagaagcaggattttgtagat
cttggagttgtgattgcgaatttagctactggaagaactgatatggacatgtcttcagcc
gcacgagcaatttatagtacatattcgagggaattttataaagcggttttatactttgta
tcggaagttcctgaggataaaaacttggagttgtttttgcaaaatcacatagaaagtttt
ttccctataatgagttcaccatacgtggaatgcgaaaaaatggagagaaaaatttcggac
gctttccaacacggtcgattttttaatattttgtgcaagattatgtttattattgataat
aatagagcttctcgtgaatatcctatcgcacgagaaaaagaaatttcattaatctactta
ttacgagattatcttttccatcagatagatgaagatgagtgtcctgtgatagatttatat
caagtgctgaatcgcctgggaaagcttgatgccggtataaatcaagccatcgcattaatt
tcccgagatgaacttgattgtgtttcagtttcttatggggagctaaaagcttggttggac
aacgtttacgaaatggaaataaattcttaa
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