Schizosaccharomyces pombe (fission yeast): 2540330
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Entry
2540330 CDS
T00076
Symbol
smf1, SPOM_SPBC3E7.14
Name
(RefSeq) Sm snRNP core protein Smf1
KO
K11098
small nuclear ribonucleoprotein F
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2540330 (smf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540330 (smf1)
03041 Spliceosome [BR:
spo03041
]
2540330 (smf1)
03032 DNA replication proteins [BR:
spo03032
]
2540330 (smf1)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
2540330 (smf1)
Spliceosome [BR:
spo03041
]
Complex A
U1 snRNP components
Sm proteins
2540330 (smf1)
U2 snRNP components
2540330 (smf1)
Complex B
U1 snRNP components
2540330 (smf1)
U4/U6.U5 tri-snRNP components
2540330 (smf1)
Complex C
U2 snRNP components
2540330 (smf1)
DNA replication proteins [BR:
spo03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
2540330 (smf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
2540330
NCBI-ProteinID:
NP_596101
PomBase:
SPBC3E7.14
SPBC3E7.14.1
UniProt:
O59734
Structure
PDB
PDBj
LinkDB
All DBs
Position
II:join(2685690..2685886,2686006..2686045)
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AA seq
78 aa
AA seq
DB search
MSFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDL
GEILIRCNNVLWVGESTV
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgttccagtaaacccgaaaccttttttgcaaggtcttattgggaaacctgtc
cttgttcgtcttaaatggggtcaagagtataaaggaaccttgcagtctgtagatagttat
atgaatttgcaacttttaaatgcagaggagttagtcgatggtgtaaaaacaggagattta
ggtgagattttgatcaggtgcaataatgtcctttgggttggcgagagtactgtttaa
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