Schizosaccharomyces pombe (fission yeast): 2540520
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Entry
2540520 CDS
T00076
Symbol
lsm1, SPOM_SPBC3D6.08C
Name
(RefSeq) mRNA-decapping complex subunit Lsm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2540520 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540520 (lsm1)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
2540520 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
2540520 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
2540520
NCBI-ProteinID:
NP_595520
PomBase:
SPBC3D6.08c
SPBC3D6.08c.1
UniProt:
P87173
Structure
PDB
PDBj
LinkDB
All DBs
Position
II:complement(join(1284489..1284662,1284740..1284855,1284904..1284972,1285021..1285084))
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AA seq
140 aa
AA seq
DB search
MNQATQIIPFTTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDD
MYGDIDRGVYIVRGENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEEEKKKNIRE
KGKYLHSVGFSVDGGHDDLY
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagctacacagattatcccattcacaacttctgggtcacttgttgactacgta
gacagaaaagtgattgttgttttacgagatggaaaaaaactgattggaattttaaggtcc
tttgatcaatttgcaaatttaatgttgcaatacacgattgagaggatctatgtggatgat
atgtacggggacatagacagaggtgtgtatattgttcggggcgagaacgtcgtgctttta
ggtgaattggatttggataaggagtatgatgcagtcaaacaattgcgacgtatgcctgct
gaagaactgtatcctttggcgaagcttcatgaagaagagaagaagaaaaatatacgtgag
aagggcaagtaccttcattctgtaggctttagtgttgacggcggacatgatgatttgtat
tag
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integrated database retrieval system
