Schizosaccharomyces pombe (fission yeast): 2540684
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Entry
2540684 CDS
T00076
Symbol
pmh1, SPOM_SPBC776.18C
Name
(RefSeq) transcription factor TFIIK complex ubiquitin-protein ligase E3 subunit, Pmh1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03022
Basal transcription factors
spo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
2540684 (pmh1)
09124 Replication and repair
03420 Nucleotide excision repair
2540684 (pmh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spo03021
]
2540684 (pmh1)
03400 DNA repair and recombination proteins [BR:
spo03400
]
2540684 (pmh1)
Transcription machinery [BR:
spo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
2540684 (pmh1)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
2540684 (pmh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-C3HC4_2
zf-RING_16
zf-C3HC4
zf-RING_2
TRAF3_RING
DUF3797
Motif
Other DBs
NCBI-GeneID:
2540684
NCBI-ProteinID:
NP_596334
PomBase:
SPBC776.18c
SPBC776.18c.1
UniProt:
O94684
LinkDB
All DBs
Position
II:complement(join(3212331..3212472,3212528..3212996,3213042..3213115,3213166..3213305,3213367..3213470,3213523..3213550))
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AA seq
318 aa
AA seq
DB search
MDDEGARKVDEKCPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCN
KILRKAKFREQTFEDAQIEREVDVRKRISRIFNKGQQEFDSLQAYNDYLEEVEILTFNLI
YKIDVEETEEKVKQYEKQNRDSIAANSARAAAEARILAQNEILLKRQKQEAREAAIREHQ
KEKERREQVEQQIIFDLATSGKDPNKIIQLSDSLKKQQENIASSVSNISRSSSILLSDVQ
QVAEDTTPFSPLAGEKDGSKYFSYSKNTYQDLYLEKVSHEPGRKCGFRIEDCHLRCLYEA
FSGIDYDLESLKKLEVAS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgaaggtgctaggaaagttgatgaaaaatgtccgttgtgccaggcggacaga
tatttaaatccaaatatgaaattacttataaaccctgagtgctatcacaagatgtgtgag
tcttgtgtagacagaatatttacaactggacctgctcaatgccctactcctgggtgcaac
aaaattctcagaaaagccaaatttcgagagcaaacatttgaagatgctcaaattgagcgc
gaagtcgatgttcggaagcggatatctcgaatctttaacaaaggacagcaagaatttgac
agcttgcaggcttacaatgactacttggaagaagttgaaattttaacatttaatttgatt
tataaaatcgacgttgaagaaactgaggaaaaagttaaacaatatgaaaaacaaaatcga
gattctatagcagcaaattctgcaagagccgccgcagaagcacgcattttggctcaaaac
gagattcttctcaaacgccaaaagcaagaagcaagagaagcggctatacgtgagcatcaa
aaagaaaaggaaagacgtgaacaggttgagcaacaaattatttttgatttagctacatca
ggaaaagatcctaacaaaattatccaactatctgattcccttaaaaagcaacaagaaaac
attgcctcttcggtttcaaacatttcacgttcatcttcaattcttctatctgatgttcag
caagtagcagaggatactacgccttttagtcctcttgctggagaaaaagatgggagcaag
tatttttcatactccaaaaacacctatcaagatttatatttggaaaaagtttcgcatgaa
ccaggccgcaaatgcggtttccgtatagaagattgtcatttgcgatgcttatatgaggct
tttagtggcattgattacgatttagaaagtctcaaaaaacttgaagtagcaagttag
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