Schizosaccharomyces pombe (fission yeast): 2540695
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Entry
2540695 CDS
T00076
Symbol
msh2, SPOM_SPBC19G7.01C
Name
(RefSeq) DNA mismatch repair protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
2540695 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spo03400
]
2540695 (msh2)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
2540695 (msh2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_22
AAA_27
Motif
Other DBs
NCBI-GeneID:
2540695
NCBI-ProteinID:
NP_001342761
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All DBs
Position
II:complement(join(2344457..2347291,2347386..2347468,2347512..2347542))
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AA seq
982 aa
AA seq
DB search
MSSRNASIANERTDEARMFNFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTS
VLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLAKRVEIWGANSAKTGFELLKQASPGNMQM
LEDLLVSENYQESTAISDSSVSSVLLAVTTRVKQDQRIIGVAFIDPILKKLGVSEFVDSD
AYTNFEALIVQVGAKECIISQSGHESTNGNSAVSINTAEINRLRNIIEGCGALVTTIRSS
EFSARDVELELSKVLDSPVTHALVPELGLQLAMASCNALLRYLGPALLNPDMEDDRENTS
RKLHLYHHNLEQYMRLDIAAVRSLNLLPPPNGNAHKTMSLYGLLNHCRTAMGARNLRRWI
VQPLLDAKSIERRHDLVSALVEDAEARQLLLDDDHLLRSIPDIPKLCRRLTRGSASLEDV
VRIYQMAKALPKIVTVLDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTIDLEALD
SHQYIIRAEFDEELLDLRQRLDELQHSIFEEHKRVGSDLHQDTEKKLHLEQHHLYGWCLR
LTRTEAGCLRGRSSHYTELSTQKNGVYFTTKRLHSLNNSYMDHQKSYRYHQNGLAREVIK
IAATYGPPLEAIGQVIAHLDVILSFAHASTVAVIPYVRPNIVDSSIAQEKHGQSSNILDI
VSLEDTPNFEEIRRTLENNHCARLYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELLIIT
GPNMGGKSTYIRQVGVITVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAE
MLETATILRAATPRSLIIIDELGRGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMT
KLSEEITTVKNLHVTAYVGDSESKDVALLYNVCEGASDRSFGIHVAKLAHFPPKIIEMAS
NKAAELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVKPEMTQQQMMDQFQKVIGS
FAQQINSNNWLQSRVSTNEVSS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctagaaacgcttcaattgctaatgaaagaactgatgaggcaaggatgtttaat
ttttatgaaaaaatgcctaaagatacaaacacagtgcgtgtatttgatcgaggggaattt
tacgttgcaataggagaagacgcttcgtttgttgctcaaaacgcgtatcacactacttcg
gtgctaaaacaccacaatgtgtctaatacatcttattgtaacttatctccttcactattt
attaagtttgcggaagatgttttaagcaaccttgcaaagagagttgaaatttggggagcc
aattccgcaaagacaggatttgaattgttgaagcaagctagtcctggaaatatgcaaatg
ctggaagatttgcttgttagtgagaattatcaagaatccacagccattagtgatagctca
gttagttcggttttgttggctgttactactagggttaaacaagatcagcgaataattggc
gttgcttttatagatccaattttaaaaaaattaggtgtttcagaatttgttgactcagat
gcttatacgaactttgaagctctcatagtgcaagttggagcgaaagagtgcataatatcg
caatctgggcatgaatcgacgaatggcaattcagccgtttctattaacacggcagaaatc
aatcgtcttcgaaatattattgaaggttgtggcgcattagttacaactataagaagctct
gaattttcggctcgagatgttgaacttgagctctcaaaagtgctcgacagtccagttaca
catgctcttgttccagaactaggtctacaattagcaatggcatcctgcaatgcattgctt
cgctatttaggacctgcgttactaaaccctgacatggaagacgaccgtgaaaacacatct
cgaaagctccatctgtatcatcacaacttggaacaatacatgcgattagatattgcagca
gttcgttctcttaacctacttcctcctcccaatggtaatgctcataaaacaatgagtctt
tatggtttacttaatcattgtagaactgcgatgggagcaaggaatttaagaagatggatt
gttcagccacttttggatgcaaaatcaattgaacgaagacatgacttggtctccgcactt
gtggaagatgctgaggcacgccagttattgcttgatgatgatcatcttcttcgttcaatt
ccagatattcctaaactatgcaggcgtttaactcgtggatcagctagtctagaagatgtt
gtacgtatttatcaaatggcaaaggcacttccgaagatcgttacggtacttgactctttg
actagtgaacataaagatttggtggataaagtatacacgaacgtccttaacaatcattgc
aaaaacttggaaaaattaatagagcttgttgaaaccaccatcgacttggaagcattggat
tcacatcagtatattatccgtgcagagtttgatgaggagctattagatttgcgtcaacga
ttagacgaattacagcattctatctttgaagaacataaaagggtcggttcagatctccac
caagataccgagaaaaaattacatcttgagcaacatcacctctatggatggtgtctacgc
cttactagaacagaagctggctgtttaagaggccgtagttctcattatacagaattatca
actcaaaaaaatggagtctactttaccactaaacgtcttcattcactaaacaattcttat
atggatcaccaaaaaagctaccggtaccaccaaaatgggcttgcacgtgaagttataaag
atagctgcaacatacggtcctcctttggaggcgattggccaagtaattgctcatttggac
gtgattctaagtttcgcacatgcaagtacggtagctgtaataccttatgtaagaccaaat
attgtggattcaagcattgcacaagaaaagcatggacaaagtagcaatattttggacatt
gtttcattagaagatactcctaattttgaagaaatacgaagaactctagaaaataatcat
tgtgctcgtctctacctaaaacaagcgcgacatccttgtttggaagctcaggacgatgtg
aagttcatacccaatgatgttaatcttgagcatggaagttcagagctattaatcataacc
ggaccaaatatgggtggaaaatcaacgtatatccgtcaagttggagttattaccgtcatg
gcacagattggttgtccagtgccttgtgaagtggctgatctagatattattgatgctatc
cttgcacgtgtcggagccagcgactcacagcttaaaggcatttctactttcatggccgaa
atgttggagaccgctacgattttgagagctgccacaccgcgatccttaatcatcattgat
gaattaggacgagggactagcacaaccgatggttttggattagcgtgggctattacagaa
cacatcgtgactcaaatcggttgcttttgccttttcgcaacacattatcatgaaatgacc
aaactatcagaagaaatcactactgtcaaaaatttgcatgttacagcctatgtaggtgat
tcagaatcgaaggatgtagctttactctataatgtttgtgaaggagctagtgatcggagt
tttggaatccatgttgctaaacttgcgcacttccctcccaagattattgaaatggcaagc
aacaaagccgcagaattagaagctgaagactctggagcccaaggggatactcaagaagtg
aaatctaaaaaagaaggtatggcaattgtacgtgatataatgagacaatggcgtagcaac
gtcaaaccagaaatgactcagcaacaaatgatggaccaatttcaaaaagtcatcggctca
ttcgcacagcaaatcaattccaacaactggctacaatccagggtatccacaaatgaggtt
tcctcatga
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