Schizosaccharomyces pombe (fission yeast): 2540716
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Entry
2540716 CDS
T00076
Symbol
sec13, SPOM_SPBC215.15
Name
(RefSeq) GATOR2-SEACAT complex/COPII-coated vesicle component/nuclear pore outer ring WD repeat protein Sec13
KO
K14004
protein transport protein SEC13
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03013
Nucleocytoplasmic transport
spo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
2540716 (sec13)
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
2540716 (sec13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540716 (sec13)
04131 Membrane trafficking [BR:
spo04131
]
2540716 (sec13)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
2540716 (sec13)
Membrane trafficking [BR:
spo04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
2540716 (sec13)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
2540716 (sec13)
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
2540716 (sec13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_EML
Beta-prop_ELP1_1st
WDR90_beta-prop_4th
ASA1
Motif
Other DBs
NCBI-GeneID:
2540716
NCBI-ProteinID:
NP_596692
PomBase:
SPBC215.15
SPBC215.15.1
UniProt:
O94319
LinkDB
All DBs
Position
II:join(4060033..4060068,4060145..4061002)
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AA seq
297 aa
AA seq
DB search
MTTVDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLG
WAHPKFGTILASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACAS
SDGKVSVLEFKDDGSCDTRIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCD
NLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEG
DGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSCGDNKVYLFKESQNKWQLLNELSN
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgtagatacacagcacgatgatatgattcatgatgcgattttagattattat
ggaaaacgtttagctacgtgctcttctgatcaaaccattaaagttttttcaattgagaac
aatcaacaaacactgttagaaaccttaagaggtcattcaggccccgtttggcaacttggc
tgggcccatcccaagtttggtactatcctagcctctgcttcttatgacggacatgttatt
gtttggcgcgaaactggcggtgtttggagtgagttaatggatcatacagctcaccaagca
tctgttaatgctgtctcctgggccccccatgagtatggtgctctattagcttgtgcaagt
tcagacggaaaagtttctgtgttagaattcaaagatgatggctcttgtgatacccgtatc
ttcaccgctcatgagcctggttgtaacgctgtctgttggtcaccccccagcctgtctggc
tctgttgttggtcaatcccccgctgcgggtcccaaaaaactagccactgccggttgtgat
aatctcgtgaaaatttgggcttttgatgcaggtgtcaacaactggatccttgaagacacg
ttagctggacatgtggattggaccagagacgttgcttgggctcccagtgtgggcctcacc
aaaacttatttagcttccgcctctcaagataaaaatgtttttatttggactaaagaagga
gatggtccctggcaaaaaacccctcttaccgaagaaaaattccctgacatcgcatggcgt
gtatcttggtcattatctggcaatatattggctgtttcttgcggcgataacaaggtatat
ctttttaaagaatcacaaaataaatggcagcttctcaatgaactgagcaactga
DBGET
integrated database retrieval system
