Schizosaccharomyces pombe (fission yeast): 2540753
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Entry
2540753 CDS
T00076
Symbol
cwf3, SPOM_SPBC211.02C
Name
(RefSeq) protein Cwf3
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2540753 (cwf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540753 (cwf3)
03041 Spliceosome [BR:
spo03041
]
2540753 (cwf3)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
2540753 (cwf3)
Spliceosome [BR:
spo03041
]
Complex B
Other components
Prp19-related factors
2540753 (cwf3)
Complex C
2540753 (cwf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
TPR_16
TPR_2
NRDE-2
TPR_17
Motif
Other DBs
NCBI-GeneID:
2540753
NCBI-ProteinID:
NP_596612
UniProt:
Q9P7R9
Structure
PDB
PDBj
LinkDB
All DBs
Position
II:complement(join(3871208..3872764,3872823..3873638))
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AA seq
790 aa
AA seq
DB search
MGDVIPLKVNFDLINVDDEPFELELLRDPYSLKSWLRYIKTHEGSTLEKRVLLFERACSE
LPGSYKIWKSYLELRVAHVEHLNPYFHAEAFASVNDCFERSLILLHKMPVIWKLYLQFLM
KQPNVTKIRCTFNSALRALPVTQHDDIWDMFTKYAEDIGGLFCIHVYRRYIQVEPRAIEN
YIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEK
VFRAGIKRFSDQAGKLWTYLAQYYIRIGDYEKARSTFYEGMNNIMTVRNFTIIFDAFVEF
EEQWLSARVEASSGNANDELSIDFHMAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVK
FLEDDSEKVVQVYTDAIKNVNPKLAHGSLGKLFSEFARFYENFDDLEQSRIIFEKATHVP
YKTVNELAQVWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHISFFDESLSPQVRLHKSS
KIWMYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERG
VALFSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEE
KFGKAKRSISILEKAADKVKTADRLAIYNVLLVKVALNYGVLATRTVYEKAIESLSDSEV
KDMCLRFAEMETKLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEFEIRYGNPEETVKEM
LRIKRSVQTKFSTDSLHIAKRAAKIESAAAPMDPMEQLEMEKSEGPKALAGFVLSKSNPQ
ETSKITGEEN
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgggagatgttattccactgaaagttaattttgatctaattaatgttgatgacgagccg
tttgagcttgaattgctacgtgatccatattctctgaaaagttggttacgatatataaag
acccatgaaggatctactttggaaaagcgtgtgcttttatttgaaagagcttgttcagaa
ctcccgggaagctataaaatatggaaaagctatttggaactacgtgtagcgcatgttgaa
catttgaacccatattttcatgccgaagcttttgcttctgtaaacgattgttttgagcgc
tctttgattttattgcataaaatgcctgttatttggaaactatatttacaatttttgatg
aaacaaccaaatgtcactaagattcgttgtacatttaactctgcacttcgcgccttaccg
gtaactcagcacgatgatatttgggacatgtttacgaaatatgctgaagatattggagga
ttattttgcatccatgtctaccgcagatatatacaagtagaaccaagagcaattgaaaac
tacattgagatactttgtaaattagggctgtggaatgaagctgctcgacaatatgaggat
attttaaatcggcccgtgtttttatcagcaaaaaggaagagcaattatcagatatggctc
gagttttccgagttagttgttcagcatcctgaccatacgcaaaacatagacgtagaaaag
gtttttagagctggcattaaaaggttttctgatcaagcagggaaactatggacttatttg
gcacaatattatatacgcattggtgactacgagaaggcaagaagcacattctatgaaggg
atgaataacataatgactgtaagaaattttacaattatattcgatgcttttgttgaattc
gaagagcaatggctatctgcacgagttgaagcaagcagcggaaatgcaaatgacgaatta
agtatcgattttcatatggcctggctcgagaaaatacttgacaaacgtccgctttatatc
aatgatgtattattaaggcaaaatataaataacgttgacgaatggcttcgccgagtcaag
tttttagaagacgacagcgaaaaagttgttcaagtttacacagacgctataaaaaatgta
aatccaaagctggcgcatggctccctcggcaaattgttttcagagtttgctcgtttttat
gaaaattttgatgatttagaacaatcaaggataatttttgaaaaggctactcatgtacca
tataaaacagtcaatgagttagcacaagtttggattgactgggccgagatggaacttcga
catcaaaattttgacgctgcgagaaaattaataggagatgccgttcatgctcctagaaaa
agtcatatcagcttttttgatgaatcactcagtccacaagtacggctacacaagtcatct
aagatatggatgtattatcttgatcttgaggaaagcgttggtacgattgaaactacacgc
aaattgtacgaccgcgtctttgaactaaaaattgctactccccaggtggttgtcaattat
gcaaatctcttagaggagaatgcttattttgaagattcatttaaaatttatgagagaggt
gttgcgttatttagttatcccgtggcttttgaactttggaatttatatttaacaaaattt
gttaaacgatatcaaggaacgcatatggaaaggaccagggatttatttgaacaagcatta
gaaggatgtccgcccgaattttcgaaaagtatttatcttctgtatgccgatttcgaagaa
aagtttggcaaagcaaaaagatccatttctattttagaaaaagcggccgacaaggttaaa
acagcagaccgtcttgctatttacaatgtgttactcgttaaagtggcattaaattatggt
gtactggcgacaaggacagtttatgagaaggctattgaatccctgagtgactcagaagtc
aaagatatgtgcttaaggtttgctgaaatggagacgaaacttggtgaaatcgatcgtgct
cgtttaatatatattcatggaagtcaatactgtgatccaagagttgaaacggattattgg
aaagcatggcaagaatttgaaataaggtacggaaatccagaagaaacagttaaagaaatg
cttcgtattaaacggtctgtacaaactaagtttagcactgattcccttcatatagcgaag
agagcagctaaaattgaaagtgcagcagcaccaatggatccaatggaacagcttgaaatg
gaaaaatctgaaggacctaaggcacttgcgggttttgttctttcgaaaagcaatccccaa
gaaacttcaaaaattactggtgaggaaaactaa
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