Schizosaccharomyces pombe (fission yeast): 2540788
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Entry
2540788 CDS
T00076
Symbol
swd2, SPOM_SPBC18H10.06C
Name
(RefSeq) Set1C complex subunit Swd2.1
KO
K14962
COMPASS component SWD2
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
2540788 (swd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540788 (swd2)
03036 Chromosome and associated proteins [BR:
spo03036
]
2540788 (swd2)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
2540788 (swd2)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
2540788 (swd2)
COMPASS/SET1 complex (yeast)
2540788 (swd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_EIPR1
WD_LRWD1
Beta-prop_DCAF4
SGL
NBCH_WD40
Beta-prop_SCAP
DUF7346
Motif
Other DBs
NCBI-GeneID:
2540788
NCBI-ProteinID:
NP_595730
PomBase:
SPBC18H10.06c
SPBC18H10.06c.1
UniProt:
O60137
LinkDB
All DBs
Position
II:complement(join(1781975..1782607,1782656..1782920,1782981..1783156))
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AA seq
357 aa
AA seq
DB search
MTTVSITFDLLSSMQPRKWLKNQNFVGEITSLSFDDSGELCLASCTDDTLQLYNCISGKF
VKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTVTSIDV
SPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLY
NIKSFDARPFQDIPLTFLPPHVRIANVEFSTDGKYLLLTTGNDFHYVIDAYSGSELLRVP
SKVSTKTQDGNLTYYASACMSPDSKFLFTSYDNEHLCMYQLPELKQTVNSDHIVNSFTEM
GLASTTPTSNSHSTENPLAIIPSSTSKNLLPETPSIVRFNPRFSQLVTAHSGVIFWT
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagtttcaattacttttgacttgttgtcgtctatgcaaccaagaaaatggctg
aaaaatcagaattttgttggtgaaattacctctctcagttttgacgacagtggagagttg
tgcttggcgtcgtgtactgatgatactttacaactgtataactgcatttctggaaaattt
gtgaaatcacttgcaagcaaaaagtacggagcacatttaggtcggtttactcatcattca
aattcattaatacatgcttccacaaaggaagacaataccgttcgttatttagacgttgtg
acaaatcggtatcttcgatattttcctggccataagcaaacagtgacttcaatcgatgta
tcaccagcagatgaaacttttttaagcgcttctttagataatactattcgcctttgggac
cttcggtctccaaattgccagggtttgctcaatgttagttcacccgttgttgcagctttt
gatgctacaggactaatctttgcctcagttagtgaaagaaaatacaaaatttctctttat
aacattaaatcatttgatgctcgcccatttcaagacattcctttaacattcctgccccct
catgtccgcattgcaaatgtggaattcagtactgatggtaaatatctattgctaacaact
ggaaatgattttcattacgttatagacgcttatagtggaagtgaattattaagagttcct
tcaaaggttagcacaaaaacccaagatggaaatttgacttattatgcttcagcttgcatg
tctccagatagtaaatttctttttacttcatatgataatgagcatctttgcatgtatcaa
ctaccagaactgaaacaaactgttaactcggatcacattgttaattcattcaccgaaatg
ggcctagcatcaactactccgaccagcaatagtcattcaacagagaacccgctagctatc
attccttcttcaacatctaaaaaccttttaccagaaacaccttctattgttcgctttaat
ccacgcttctctcaattagttacagcacattctggagtaattttctggacgtaa
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