Schizosaccharomyces pombe (fission yeast): 2540796
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Entry
2540796 CDS
T00076
Symbol
sof1, SPOM_SPBC1A4.07C
Name
(RefSeq) U3 snoRNP-associated protein Sof1
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spo03009
]
2540796 (sof1)
04121 Ubiquitin system [BR:
spo04121
]
2540796 (sof1)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
90S particles
Other 90S particles
2540796 (sof1)
Ubiquitin system [BR:
spo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
2540796 (sof1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Sof1
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
PROPPIN
Beta-prop_SPT8
NBCH_WD40
Beta-prop_Vps41
MIOS_WD40
PQQ_2
Beta-prop_NOL10_N
DUF7165
Beta-prop_HPS5
DUF5074
Motif
Other DBs
NCBI-GeneID:
2540796
NCBI-ProteinID:
NP_595809
PomBase:
SPBC1A4.07c
SPBC1A4.07c.1
UniProt:
O74340
LinkDB
All DBs
Position
II:complement(join(1988986..1990034,1990091..1990352))
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AA seq
436 aa
AA seq
DB search
MKVKTITRGTSLTRLNDQDPVKRNLDPSLHPFERAREYTRALNATKMDRMFAAPFLGQLG
RGHQDGVYSLARDTKTLIDCASGSGDGAVKLWDASERCERWTSKAHEGIVRGLVFSNQGD
VLSCASDRYVYMLNKQDGKVKRSYLGDSSLLDIDTSKGGDLFATSGENVSIWDYSRDTPV
TKFEWGADTLPVVKFNYTETSVLASAGMDRSIVIYDLRTSSPLTKLITKLRTNSISWNPM
EAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRIY
NVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFSGSDDSNVRLWRARASSRASIRSTREEN
RLKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRHSKKGA
VPYEKERERHVVGIQK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcaaaacaatcacccgtggtacttcgttgacacgtcttaatgatcaagatcct
gttaaaaggaatttagatccatcgctccatccttttgaacgtgcgcgtgagtatacacgt
gcattgaatgctacaaagatggacaggatgttcgcagccccttttcttggtcaattgggt
agaggacatcaagatggtgtttattcattagctcgtgatacaaaaactttgatagattgt
gccagtggaagtggtgatggtgctgtaaaactatgggatgctagtgaacgttgtgagcgc
tggacttcaaaggcacatgaaggcattgttaggggattagtattctctaatcaaggagac
gttttatcttgcgcttctgatcgctatgtttacatgcttaataaacaagatggcaaagtt
aaaagatcgtatttgggagactcttctcttttggatattgacactagcaaaggaggtgat
ttatttgcaactagcggtgaaaatgtatctatttgggactattctcgtgatactccagta
acaaagtttgaatggggagctgatacattaccggtagtcaaatttaactatacggaaaca
tcggttttggcttcagctggtatggatcgatcaatcgtaatttacgatctccgtacatca
tcaccgttaaccaaattgattaccaaattgagaactaattcaatttcttggaatccaatg
gaggcatttaattttgtagctggcagtgaggatcacaatttgtatatgtacgatatgcga
aatttaaagcgggcattacacgtttataaggatcacgtttctgccgttatgtcagtagat
ttttcaccgacaggtcaagagtttgttagtggttcttatgacaaaacgattcgaatttac
aatgttcgggagggtcatagtcgtgatgtttatcatacaaaacgtatgcagcgagttact
gcagttaaattttcaatggatgcacaatacatattctctggttccgatgatagtaatgtt
cgtctttggagagctcgtgcttcttcccgtgcgtcaattcgctctactcgtgaggagaat
cgcctcaaatatcttgactcattgcgagagcgctataagcatattcctgaaattcgccgt
attgcccgtcatcgtcatcttccaactaatgtcaaaaaggctgccgaaataaaacgtgaa
gagattaattctctaaagagacgtgaagagaacattcgccgtcatagtaaaaaaggtgcc
gtgccctatgaaaaagaacgtgaaaggcatgttgttggtattcaaaaataa
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