Schizosaccharomyces pombe (fission yeast): 2540837
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Entry
2540837 CDS
T00076
Symbol
ubp4, SPOM_SPBC18H10.08C
Name
(RefSeq) ubiquitin hydrolase Ubp4
KO
K11839
ubiquitin carboxyl-terminal hydrolase 8 [EC:
3.4.19.12
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
2540837 (ubp4)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spo01002
]
2540837 (ubp4)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spo04131
]
2540837 (ubp4)
04121 Ubiquitin system [BR:
spo04121
]
2540837 (ubp4)
Enzymes [BR:
spo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
2540837 (ubp4)
Peptidases and inhibitors [BR:
spo01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
2540837 (ubp4)
Membrane trafficking [BR:
spo04131
]
Endosome - Lysosome transport
Others
Others
2540837 (ubp4)
Ubiquitin system [BR:
spo04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
2540837 (ubp4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
2540837
NCBI-ProteinID:
NP_001342719
PomBase:
SPBC18H10.08c
SPBC18H10.08c.1
LinkDB
All DBs
Position
II:complement(join(1784219..1785748,1785937..1786080,1786141..1786248))
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AA seq
593 aa
AA seq
DB search
MSDDYFDRLFELAFVYINEDETIQSCSFRGQRWLEEAQTLEQKNSLLKAYYYYLKALKLA
YEIPCRFEISVKSTHYGEFKQFQKLAIQAVSKAFTIKSKLAVKHYLPVIQISDALSLSKK
SSLKVLFLNFYSQESSKGYVFSKHTIAIPISCLQSMDSSKIYDFLKSAPFHPSMVICYSL
ERYFEDVSLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIGLTNLGNTCYMNC
VLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPR
NFLEIVQSLNRDFSIDGQCDAQEFLNFFLDKLHEDLNSNASRSPIAPLTEDQLSAREELP
LSHFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHV
VSLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGR
KKIDTPLGLSLQIPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQLENGHYISDVLFNNE
WCHIDDSIVRTVGGITDLREDFSSSYILFYKRSSLLEEFEDKCPKMTLKRNVK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgattatttcgacagactatttgaattagcattcgtttatattaatgaagat
gaaacgattcaaagctgttccttcagaggacaacgctggcttgaagaggcccaaactctt
gaacaaaaaaattcattactcaaagcatactattactatttaaaagcactaaaacttgct
tacgaaattccatgccgattcgagatttctgttaagtctactcattatggagaattcaaa
cagttccaaaagttagcaattcaagccgtttccaaagcctttactataaaaagcaaatta
gcggtgaagcattatttgcctgtaattcaaatctctgacgctctttccctatcaaaaaaa
tcatcacttaaagttctttttcttaatttctattcccaagagtcttcaaagggttatgtt
ttttcgaagcacacgattgccatcccaatatcctgtttgcaatcgatggattcttcaaaa
atatatgactttttaaaatccgcaccttttcatccaagcatggttatttgttacagtttg
gaaagatacttcgaagacgtttctttggcttacaagctttactcgatgttacgttcgttg
aagttggatcctcatttcatggaattggcgaaccctaagaaagttgatagttctttatcg
tatgaaaattatcagcctataggtttaacgaatttgggtaatacttgttacatgaattgt
gtcctgcaatgtctttttgcgtgtaaggacttgactattcctatgttacaggggagagga
ttgcttcaaaatatcaataccaaaaatccattgggtaccggtggaaaaatcacatctgct
ttcttttccttgcttcaaagtgtcttattaaaccatggtcagagatcaatatctccaagg
aattttttagaaattgtacagtcattgaatagagatttctccatcgatggccaatgcgat
gctcaagaatttttaaatttctttcttgataaacttcatgaagatttgaactccaatgca
tctcggtctccgatagcaccgttgacggaagatcaattaagtgccagagaagaactccca
ttgtcccacttttcacacattgaatggaacttgcatctccggtctaacaagagtattgtg
gtcaacaattttgtaggtcaactttgcagtcgtactcaatgtatgacatgtggccgcaca
tctactacttttgctcccttcacatcgcttgcgataccgattgacgatgtctcccatgta
gtaagcctacaagaatgcttattaaaattttcagctcctgaactcttgcaagggcatgat
ggatggcattgtcccgtgtgcaaggttcaaaggtcggcaaaaaaagtaattatgatttcg
aaactacctgaatatttgatcatacaaattcagagatttaaaatatccgtaatgggtcgt
aaaaaaattgatacaccacttggattgagcttacagattccaagtaaaatgctggtacca
ccgagtttccaatcgggaattggttatattcctagcaattataacctgtttgcatttatc
tgtcattatggccagctcgaaaatggacattatatatctgatgtactttttaataatgaa
tggtgccatattgatgactcaattgttcgaacagtgggcggtattactgacttgagagaa
gatttctcctcttcctacattcttttttataaacgctcaagtctgttggaggagtttgaa
gataagtgtcccaaaatgactttgaaaagaaatgttaaataa
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integrated database retrieval system
