Schizosaccharomyces pombe (fission yeast): 2540838
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Entry
2540838 CDS
T00076
Symbol
SPOM_SPBC609.01
Name
(RefSeq) Dis3-like exonuclease family protein
KO
K18748
protein SSD1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2540838 (SPOM_SPBC609.01)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
2540838 (SPOM_SPBC609.01)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
Rrp44_CSD1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
2540838
NCBI-ProteinID:
NP_596311
PomBase:
SPBC609.01
SPBC609.01.1
UniProt:
O94525
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All DBs
Position
II:join(3157597..3157717,3157860..3161212)
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AA seq
1157 aa
AA seq
DB search
MDPHWKRHDSSNIPTQPSPSASPKSNKPSSAQRFGNLPWVAPDVIQSQIEYLQALQMQQS
LSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQPNPSIPQQFSKPINESG
TGTMGPAVGELTSPVMKNRAESIFSPVTESFEAFTQGMQTTPQRAGAGVSTATSHTRRRS
SAGTDPFSPVSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHSVEPESPIFQQ
APQIPLSNASQQSYINHSSDGASLPQSSFLNFNSSGKRVSVSAAAQQHKNLFLPYLPQAS
LPKFIGTGKLLVGTLHINRKNRSDAYVITDVLDEPIFICGSKDRNRTLEGDLVAVELLDV
NEIMQTKREKEEKKIRRNLSLSGSSKYSVNSKAKMMSISTPMALGMNRGVLSFERSIEKR
KNDYEVTGQSLSFVDDVSLTPDSAPKYAGHVVAVLNRPSGETCSGTLALYRPNSLALKNQ
SSHRRNSSTSSGETGKGPKIVWFKPSDKRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGI
KRWPTTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCHTYDFPESLSHCVKRLPTPIPAE
ELQKRYNLRDKLTFMIGTRDYALHIDTGSIDGVITLGIHVADVAYYVKQDMPLDDEAANR
VSEVQLLQGSVPFLPKKVSEEISLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSS
FISLESAQANLQTNEALQLVDASAHVLTKLRLKTDKKLDLQSLYCFEFCDGQIPNIQNIN
MSIFEAFPIACSLQQIEHWVNEKVASHLMSVFPSKVILRKNQRPSDFASLVAVSELTGVN
LSASSTPSEIMTEIATTKDKRTKMLLQLTLRRMCNESEYTIGTSNAKDVSHFVFSCPYYT
HFCHPTRRYIDICVQRQLREAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAY
LCQLLHSINLRSGLVKHKAFVLAVDQEYIDIVIYEFGLERRISLDLLPLSNCDFNEQKHE
LYLSWRTNASFFYASSSLEIDTPCFNDFKKKFLDSNGMCKQICDMMDAQVRDLANAAESQ
ESFYSKARGNDSTSKTAKSSSGNQDISGDGKLHSLRMKEPEVVQTIRPGQEVSVLIFADT
SATYSLSLITLQSPLSS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcattggaaaagacacgattcttcaaacattcctacacagccttcaccttcc
gcctctcccaaatcaaataaaccttcctctgctcagaggtttggtaatcttccttgggtt
gctccagacgtaatccaatctcaaatcgagtatttacaggcactgcaaatgcagcaatct
ctctctgaatctgagaattacttacagccaaactttttccctttccaatccggtccgttc
tcaaaatctcgaagggagaacacattgttgcccagattaaacccgcttgcacctattgga
gcaagacagcctaatccttcaattccacagcaattttccaagcctatcaatgaatctggt
actggtacaatgggtcctgcagtaggagagctcaccagccctgtgatgaagaatcgagcg
gaatcgatattcagtccggtaactgagtcttttgaagcatttactcaagggatgcagaca
actccacaacgagctggagcaggtgtttcgactgctacatcgcatacaagacgtcgttct
tctgctggtacagatcctttttctccggtttcgccttcaaatccaaatttcctgacgcct
ttgaaacctatagatggaaatcaggaatggcagcaatcacctttagagtctcccttgtct
atgcattctttgcaggaaagcttacacagcgttgaacctgaatctccgatttttcaacag
gctccgcaaatccctttgtcaaatgcttctcaacaatcctacatcaatcattcatctgat
ggagcttctcttcctcaaagctcctttttaaattttaacagtagcggaaaacgggtctcc
gtttctgctgctgcccaacagcacaaaaatctttttcttccttatcttccccaagcgtcc
cttccgaagttcattggtactggtaagttgcttgttgggacccttcacataaatcgtaaa
aatcgttctgatgcatacgttattacggacgtgcttgacgagcctatttttatttgcgga
tccaaggacagaaataggactttggaaggggatttggtagccgtcgaacttttggatgtt
aatgaaattatgcaaacgaagagagagaaagaggagaagaagattcgccgtaacctatcc
ctctctggttcttctaagtattcagtcaacagtaaagcaaaaatgatgtctatcagtaca
cccatggctttaggaatgaataggggtgttctttcgtttgaaaggtctattgagaaacgg
aagaacgattacgaggtaaccggccagagtctttcgtttgtcgacgatgtttcacttact
cccgattctgctccaaaatacgcaggtcatgtcgttgctgtactcaacagacctagcggt
gaaacttgctcaggcactttagcgttgtatagacccaatagccttgctttgaagaatcag
tcctctcatcgaagaaattcatccacatccagtggtgaaacgggaaaaggccctaaaatt
gtttggttcaaaccaagtgacaagcgtattcctcttattgctatatctagtgaccaagta
ccccctaccttttttacaaataacgacgattttaaggataaggtatttttggctggcatc
aagagatggcctactacgtccttgcatccttttggaacgctatatgaaagtattggaaca
attggggaccccaaggtggagtacaaagcaattcttcacgatttcagttgccacacatat
gacttccctgaatccctttctcattgtgttaaaagattacctacgcctatccctgcagaa
gagctacaaaagcgatacaatttacgagataagttaaccttcatgattggaacgcgtgat
tatgctctccatattgatacaggctccatcgacggagtcatcacacttggaatacacgtt
gcagacgtcgcgtattacgttaagcaagatatgcctcttgatgatgaagctgccaataga
gtatcagaagtacaattgttgcaaggttccgtaccctttttaccgaaaaaggtctcagaa
gagatttcccttatagagggacatgattgtttaacaattagtatagttgtacagcttgat
ttgaaaagcggcgctgttttacagtgttcccttgggccctctgtaatccacccgtcaagt
tttattagtttagaaagtgcacaagcaaacttgcaaaccaacgaagcgcttcagctagtt
gatgcatcggcccatgtccttaccaaactaagattgaaaacagataagaaacttgactta
caatccttatactgctttgaattttgcgatgggcagattcctaatatacagaatattaac
atgagtatttttgaggcattccctattgcatgttctttacaacaaattgaacattgggta
aacgagaaagttgcatctcatttaatgtctgtttttcccagtaaagtgattttgcgaaaa
aatcaaagaccttctgactttgcatctcttgttgcagtttctgagttaaccggagtgaat
ttatctgcttcatctactccttcggaaatcatgaccgaaattgcaactaccaaggataag
agaaccaaaatgttactacaattgactctaagaagaatgtgtaatgaatctgaatacact
atcggtacttcaaatgctaaggatgtttcgcattttgtgttctcttgtccttactacacc
catttttgtcaccctactcgtagatatatcgatatatgtgtacagagacaattacgcgaa
gcctttgatggcagaccagacttttccaaagactacagaagtttactttctataactcag
tcttgtaacacactgagcaacttctaccgtaatgcccaggaaaaaagtctacatgcatat
ttatgtcaacttctccattctattaatttacgatctgggctcgttaagcataaggctttt
gttttggctgttgaccaggagtatattgacatagtcatatacgaatttggcttggaaaga
aggatctccttggatctgctaccgcttagtaactgcgactttaatgagcaaaaacacgaa
ctctatttatcatggaggacaaatgcttctttcttttatgcttcatcttctttggaaatt
gatacaccttgtttcaatgactttaagaaaaaatttttggattccaacgggatgtgcaaa
caaatatgcgatatgatggatgcacaggttcgggatttagctaacgctgctgagtcccag
gagtctttctattcaaaggctcgaggcaatgacagtactagtaaaacagctaaaagttcc
tctggcaatcaggatatttccggagatggaaaacttcatagtttacgtatgaaagagcct
gaggttgttcaaaccatccgtccaggccaagaggttagtgtacttatatttgctgatact
tccgctacttactcactctcgttaattactttacaaagtcctctatccagttaa
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