Schizosaccharomyces pombe (fission yeast): 2540861
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Entry
2540861 CDS
T00076
Symbol
ckn1, SPOM_SPBC577.09
Name
(RefSeq) DNA repair ERCC8 family protein ckn1
KO
K10570
DNA excision repair protein ERCC-8
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03420
Nucleotide excision repair
spo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
2540861 (ckn1)
09124 Replication and repair
03420 Nucleotide excision repair
2540861 (ckn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spo04121
]
2540861 (ckn1)
03400 DNA repair and recombination proteins [BR:
spo03400
]
2540861 (ckn1)
Ubiquitin system [BR:
spo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
2540861 (ckn1)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
2540861 (ckn1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
eIF2A
WD_LRWD1
Beta-prop_Vps41
Ge1_WD40
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
2540861
NCBI-ProteinID:
NP_595307
PomBase:
SPBC577.09
SPBC577.09.1
UniProt:
Q9USR0
LinkDB
All DBs
Position
II:join(767782..767818,767869..768016,768080..768187,768268..768385,768434..768512,768557..769281)
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AA seq
404 aa
AA seq
DB search
MNSFLLAREWGQEPNSSFRRQLLQHRLQRLALNPDVKIKRRHGAGILGSVNALSIDNTIH
QLMVSGGANSSINVWDLQNIDQKEDEDLILDTLNAVPARTSHKFGITDLHWFPFDNGIFT
SSSFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGS
YTHSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQ
TNISHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHP
CMIQPSMDSDVFVLFPNDDGSLALLNLLEGSFVRRLSTHSLKRINCAAYRPDFEQCFTGD
MNGNIYMWSPKALKSPTKISDLETRRNIIQEVYDSLINIPVTYQ
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaattcttttttattggcacgagaatggggccaagagccaaatagctcttttcgaagg
caactactgcagcatcgtcttcaacggttagcgctgaatccggatgtgaaaattaaacgt
agacacggtgcgggcattttaggatccgtaaatgcactaagcattgataatacaattcat
cagctcatggtctctggaggagccaactcgtctatcaatgtttgggacctacaaaatatt
gaccaaaaggaagatgaagatttaattttggataccttaaatgcagttcctgctcgaacg
agtcataagtttggaataacagatttgcattggtttccgtttgataatggtatttttact
agctcgtcgttcgatcatacgctcaaggtttgggatgtttctactttacaggaagcttac
acttttactatggaggacatgatttattcacatgcatggtcgcccattgcatcacattgt
ttaattgccaccgcctaccggtcttcgtctattcggctttgtgatatgcaaagtggtagt
tatactcatagtttgtctggacacacgggtaatgtccttgcggtggattggtgtcctaag
aatgaattcgtgttagcgtccggctctgcagatggcacttgcagactttgggacattcgt
aaagtatcatccagcttcgcatgtatggatctacataataagtatttacccagtaaccag
acaaatatatctcattacggcaccgttaatggattagcttggacttcagatgctcgatat
ttggcaagttgtggtaccgacgatcgaataagagtatggaatatggaaagtggaagaaac
acattgagagaatttggacctattattcataaccagactacttccttcgcggtacatcct
tgcatgatccaaccctctatggattcagatgtttttgtgttattccccaacgatgatggg
tctcttgccttattgaacttgttagaaggctcgtttgtgcgccgactttcaacccacagt
ttaaaacgtattaattgtgctgcctatcgtcctgactttgaacagtgttttactggtgat
atgaatgggaacatttacatgtggtctcctaaagctctaaaatcgcctacgaagatttcg
gatttagaaacaagacgaaacataattcaagaagtatacgactctttaattaatattcca
gtgacttatcaataa
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