Schizosaccharomyces pombe (fission yeast): 2541045
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Entry
2541045 CDS
T00076
Symbol
pku80, SPOM_SPBC543.03C
Name
(RefSeq) Ku domain protein Pku80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
2541045 (pku80)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spo03400
]
2541045 (pku80)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
2541045 (pku80)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Motif
Other DBs
NCBI-GeneID:
2541045
NCBI-ProteinID:
NP_596791
PomBase:
SPBC543.03c
SPBC543.03c.1
UniProt:
Q9HGM8
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Position
II:complement(join(4303141..4304977,4305018..4305084,4305140..4305194,4305239..4305367))
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AA seq
695 aa
AA seq
DB search
MSDKECTVFVLDLGKDMGTCHHGRSHSDLEWTLSYFHDELSHKFLANRKTDVVGIVGYKC
DDTKNDLAEQEAYWNISVLYPIQTALFSKLQSVSQTLKPSNTMQGDLISAIVVSFDLMAR
HCKKNKWKKKMIVLTAARGIIDFSDYIGIAEQLLQHDVFLGVYGVDFDQEDINYSEPLKE
SQKKENEVRIQEFVESCHGQYCTFQQIYNNIGKPWVRKVRPVAIFRGTFSIGNRDSKDTS
ISIQVERYPRTRLTKPPTSSAFYENDMSKNYECLNIENSNVENKSMESDAVSTVRSYMVR
DPKTNDSFEVKREDLESGYSYGRTIVPISRSDEDVLALDTIPGYEILGFIPKSSLPIYYT
ISDTNIIVPKDDFESKLNFSAFVQSLEREHRYALARFVSKDKGVPVLLVLMPYVEFKRHY
LVDIQLPFAEDVRPYSFSEFEKLSNEEDMRQIDFAVSNYIDNMDLDSSDCGFNPPFEPEN
TFSMIPHRLQQAISYYANSPEGDLPQPNIYLTRYTNPPKSLLDNCILDLKLIKEKLTVNV
PVKPKYSSQETAFDTGAPISEEQIEELLNSGLDEQEGEKLLVLHVSEKDPVGTFTEVLKN
PFGLEDALTEMEKVIKNLIDKSKYDLALQSLQSLRLHSILEDEVERFNEYLTRLKKDVMQ
NNKPKENELINKIRSSGLDIILHDELTRHDNFNNI
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaggaatgtactgtttttgtacttgacttgggcaaagatatggggacctgt
caccatggcaggtctcattctgatctcgaatggactttgtcgtattttcacgacgaattg
tctcataagtttttagcaaataggaagacagacgtagttggaatcgttggttacaaatgc
gatgatacgaaaaatgatttagctgagcaggaagcctattggaatatcagtgttttgtat
cctatacaaactgccttattttcaaagctacaatccgtttctcaaacgttaaaaccaagc
aatactatgcaaggcgatctgatatctgcaatagttgtgtcctttgatttgatggctcgg
cattgtaaaaagaacaaatggaagaagaagatgatagtgcttacggcagctagggggatt
atcgactttagtgattacattggaattgccgaacaactactgcagcatgatgtttttcta
ggtgtttatggagttgattttgatcaagaagatattaattattctgagcctttaaaggaa
tctcagaaaaaggaaaacgaagttcgaattcaagagtttgttgagagttgtcatggtcag
tactgcacatttcaacagatttataacaacatcggtaaaccttgggttcgtaaagtgaga
cctgtcgcaatctttagaggtacatttagtattggtaatagagacagcaaagatacgtct
ataagcatacaggttgaaagatatcctagaactcgtttaactaaaccgccaacatcatct
gctttttatgaaaacgatatgtctaaaaattatgaatgtcttaatatcgaaaattcaaat
gtggaaaacaaaagtatggaatctgatgcagtgtctactgttcgatcgtacatggttcgt
gatccaaaaacaaacgattcttttgaggttaaaagagaagacttggaaagcggttatagt
tatggtaggacaatcgtcccgatcagccgatcagatgaagacgtattggctttagataca
atacccggttatgaaatccttggatttattcctaaatctagtcttccaatttattatacc
attagtgatactaatataatcgttccaaaagatgacttcgaaagcaaattaaatttttct
gcctttgttcaatcccttgaacgtgaacaccgatatgcgctcgcaaggtttgtttctaaa
gataagggcgtaccagttttgctggtcttgatgccttacgtggagtttaaaagacattac
ttggttgatatacaacttccattcgctgaagatgttcggccttattctttctcagagttc
gagaaactgtcaaatgaagaggatatgcgacaaattgattttgccgtaagtaattatatc
gataatatggatttagattcctctgattgtgggttcaatcctccttttgagcccgaaaat
acctttagtatgataccacatagacttcaacaagctatcagttattatgcaaattcacca
gaaggcgatcttcctcaaccaaatatttacttaacacgttacaccaatcctccaaaaagt
ttacttgataattgcattttggacttgaagttgattaaggaaaaacttacagtgaacgtc
cccgtcaaaccaaaatattcttctcaagaaacagccttcgacacaggcgccccaatatca
gaggaacaaatagaagaactactaaattctggtctcgatgaacaggaaggagaaaaatta
ttagtccttcacgttagtgaaaaagacccagtaggcactttcactgaagttttgaaaaac
ccttttggactagaggatgctttgacagaaatggaaaaagtaattaaaaatcttattgac
aagtctaagtacgatcttgctttgcagtcattgcaatctctcaggttacactcaattttg
gaagacgaagttgaaagatttaatgagtatcttactcgattgaaaaaggacgtaatgcaa
aataacaaacccaaggagaatgagcttattaacaaaataagatcatctggattagatatt
attctccatgatgaattgactagacatgataattttaataacatttag
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