Schizosaccharomyces pombe (fission yeast): 2541158
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Entry
2541158 CDS
T00076
Symbol
ssb1, SPOM_SPBC660.13C
Name
(RefSeq) DNA replication factor A subunit Ssb1
KO
K07466
replication factor A1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03030
DNA replication
spo03420
Nucleotide excision repair
spo03430
Mismatch repair
spo03440
Homologous recombination
spo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
2541158 (ssb1)
03420 Nucleotide excision repair
2541158 (ssb1)
03430 Mismatch repair
2541158 (ssb1)
03440 Homologous recombination
2541158 (ssb1)
03460 Fanconi anemia pathway
2541158 (ssb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spo03000
]
2541158 (ssb1)
03032 DNA replication proteins [BR:
spo03032
]
2541158 (ssb1)
03400 DNA repair and recombination proteins [BR:
spo03400
]
2541158 (ssb1)
Transcription factors [BR:
spo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
2541158 (ssb1)
DNA replication proteins [BR:
spo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
2541158 (ssb1)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
2541158 (ssb1)
MMR (mismatch excision repair)
2541158 (ssb1)
DSBR (double strand breaks repair)
HR (homologous recombination)
2541158 (ssb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CDC24_OB3
SHLD2_OB1
DUF936
zf_DPOE_2
IBR
Motif
Other DBs
NCBI-GeneID:
2541158
NCBI-ProteinID:
NP_595092
PomBase:
SPBC660.13c
SPBC660.13c.1
UniProt:
Q92372
LinkDB
All DBs
Position
II:complement(join(219362..221150,221220..221260))
Genome browser
AA seq
609 aa
AA seq
DB search
MAERLSVGALRIINTSDASSFPPNPILQVLTVKELNSNPTSGAPKRYRVVLSDSINYAQS
MLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGL
ETVDALRQQQNEQNNASAPRTGISTSTNSFYGNNAAATAPAPPPMMKKPAAPNSLSTIIY
PIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGEIRATGFNDQVDAF
YDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVSL
QEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTA
IEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFA
KHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAA
DCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTAD
ELNDLQENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKR
LINFIESAQ
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcgattatccgtgggtgcacttcgtataatcaatacatccgatgcttcgtct
tttcctcctaatccaattctccaagtcttaaccgtgaaggagctaaactcaaatccaact
tctggtgctcctaaaagatatcgtgttgtcctttccgattcaatcaattatgcgcaatct
atgttaagcacccagctgaaccatttggttgccgaaaataaacttcaaaaaggagcgttc
gtacagcttacccaattcactgtaaacgttatgaaagaaagaaaaattttgattgttctt
ggtttgaatgttttaactgaacttggcgtaatggataaaattggtaatcccgctggttta
gaaacagttgacgctttacggcagcagcaaaatgagcaaaacaatgctagcgcaccacga
acaggtatttcgacaagcactaactcattttatggaaacaatgctgcagctacagcaccg
gctccacctcccatgatgaagaagccagcagcgccgaatagccttagcacaataatctac
ccaattgaaggtctctctccatatcagaataaatggactattcgtgcccgtgttactaac
aaatctgaggttaaacattggcataatcaacgaggtgaaggaaagctttttagcgtaaat
ttactcgatgaaagtggggagattcgtgcaacaggctttaatgaccaggttgatgctttt
tatgatatcttacaggaaggttcggtttattatatatctcgttgtcgtgtgaacattgca
aaaaaacaatataccaatgttcaaaacgagtatgagctgatgtttgaacgtgatactgaa
ataaggaaagctgaggatcaaactgccgtccccgttgcgaagtttagttttgtttctcta
caagaagtcggcgatgttgccaaagatgctgttatcgatgtaattggtgtactccaaaac
gttggaccagttcaacaaattaccagtcgtgcaacttctcgtggatttgacaagcgtgat
atcactatcgttgaccaaacaggatatgaaatgcgtgttacgctttggggaaagacagct
attgaattctctgtttctgaagaaagtattctcgctttcaaaggagttaaagttaatgac
tttcaaggacgctctttgtcaatgttaactagcagcaccatgtcggtagatccagatatc
caggaatctcatttgttaaaaggttggtatgatggacagggtagagggcaggaatttgcc
aaacatagcgtaatttcatctactttatctactactggaaggagtgctgaacgtaaaaat
attgctgaggttcaagccgaacatctgggaatgtcagaaacacccgattattttagctta
aagggcaccattgtttacattcgaaagaaaaacgtgtcatatcctgcttgccctgctgct
gattgcaacaaaaaggtttttgatcaaggtggctcctggcgatgtgagaaatgtaataaa
gaatatgatgctcctcaataccgttatattataactattgctgtaggtgatcatacggga
caactctggctcaacgtctttgacgacgtcggtaaattaatcatgcataaaacggcagac
gaattgaatgatctacaagaaaacgacgaaaatgcctttatgaattgtatggcagaagct
tgctatatgccatatatctttcaatgtcgtgctaagcaagacaattttaaaggtgaaatg
cgagtacgctatacagtgatgtcaattaatcaaatggactggaaggaagagtctaaaaga
ttgataaatttcattgagtctgctcaataa
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