Schizosaccharomyces pombe (fission yeast): 2541477
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Entry
2541477 CDS
T00076
Symbol
rna4, SPOM_SPAC227.12
Name
(RefSeq) Prp4 family U4/U5/U6 small nuclear ribonucleoprotein complex subunit
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2541477 (rna4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spo03041
]
2541477 (rna4)
Spliceosome [BR:
spo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
2541477 (rna4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
TFIIIC_delta
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
2541477
NCBI-ProteinID:
NP_592966
PomBase:
SPAC227.12
SPAC227.12.1
UniProt:
Q9UTC7
LinkDB
All DBs
Position
I:join(515797..515833,515896..517247)
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AA seq
462 aa
AA seq
DB search
MNENEGISLGELETRPFSEGITRFTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRY
GEPITYFGEDALARRQRLQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARK
KIALYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEHLQKAELMGSQIGGERPIAIVRF
SNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLAT
GAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVEL
LMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPN
GYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRFIATSGYDGCVKLW
NPLNCSLIKSMVGHEEKVMSVDGYGDRFISSGYDRTIKLWYP
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaacgagggcatttcacttggtgaattagaaacaagaccgttttcagaaggg
ataacgcggtttacaaaagaacaagcagcttattacgcggagcaaaaggaaaaggatcgc
attaaggctcttaaaattccttatgaagattccaaagttcgtgaatatctgcgtcgttat
ggtgaacccataacttattttggtgaagatgccttagcccgacgccaaaggcttcagcaa
ttaatgatcgaaaagtccctagaaggagacaatccattagatgtagaccaaggggcttct
gaaaatattgagaaggagacgtatgttcaaggaagtcacgaactattagttgctcgtaaa
aaaatagctctttactccttggaaaaggcaaagctcagattaaaaaaagaacgggaaatt
tccgagattccagtacctgaaattgtactttccggaaagtcttcaatcgaacatttacaa
aaggctgaattgatgggctctcagataggtggtgagcgaccaatagccattgttagattc
agtaataatggaaatcattttgctagcggaagctggggtggccaggtcaaggtgtggaat
tctgataacctctcagaggttcaattgtttcgcggccataccgaccgagtttctggtttg
gattggtatcctctatgtcaggcatgggatgcagattctgagcagctgactttagcgact
ggagccgcagacaatactgtttgtttgtggaaagcaagtcaatctactccactgttacgt
ttggaaggacatttggctcgtgttggtcgagttgcttttcatccaagtggtgattactta
gtttctgcctcattcgacactacatggcggttatgggatgtacatacaggcgttgagttg
cttatgcaagaaggtcattcggaagggattttttcaatcgcctgtcagccagatgggtcg
ttagttagctcaggtggtaatgatgctatcggtcggatttgggatcttcgatcaggcaaa
tcaataatggtattagatgaacatattcgtcaaattgtcgcgatggcttggagtccaaac
ggctaccaacttgcaacttcttcagccgatgatactgtgaaaatatgggacttgcggaaa
gtgtcattggcacatactattcccgcacattcttctcttgtttcagacgttcgttatatt
gaatcaggtgttaacagattcatcgctacgagtggttatgatggctgcgtaaagctttgg
aacccgttgaactgctcattgattaaaagtatggtgggacacgaagaaaaggttatgagt
gttgacggttacggagacagatttatctcatcaggatacgatcgtacaatcaagttatgg
tacccttaa
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