Schizosaccharomyces pombe (fission yeast): 2541506
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Entry
2541506 CDS
T00076
Symbol
yth1, SPOM_SPAC227.08C
Name
(RefSeq) cleavage and polyadenylation specificity factor complex subunit Yth1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
2541506 (yth1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spo03021
]
2541506 (yth1)
03019 Messenger RNA biogenesis [BR:
spo03019
]
2541506 (yth1)
Transcription machinery [BR:
spo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
2541506 (yth1)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
2541506 (yth1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_9
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
2541506
NCBI-ProteinID:
NP_592962
PomBase:
SPAC227.08c
SPAC227.08c.1
UniProt:
Q9UTD1
LinkDB
All DBs
Position
I:complement(join(510669..510720,510780..511070,511167..511336))
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AA seq
170 aa
AA seq
DB search
MTDYIKDKAIAADFSSVQFRFDNYLKQNFNFGRSALLNSGNGRDSGSKMGSVVCKHWLRG
LCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVGVCAWYNMGFCP
LGPICRGKHVRKPRPCPKYLAGFCPLGPNCPDAHPKHSEPPHPPQKRKDW
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgactgattatatcaaagataaagctatagcagctgatttttcttcagttcaatttcgt
tttgataactatttaaagcaaaattttaatttcggaaggtctgccttgctaaactctgga
aatggacgcgattctggatcgaaaatgggtagcgtggtttgcaagcattggcttcgtgga
ctttgtaaaaaaggtgaacagtgtgattttttacacgagtacaatttaaaaaagatgcct
ccatgtcacttttatgcagagcgcggctggtgttctaatggcgaagagtgtttatatctc
catttggatcccagtaaacaagttggtgtctgtgcctggtataatatgggattttgtcct
ttaggacctatatgtcgaggcaaacatgtacgaaaaccaaggccttgcccaaaatattta
gctgggttttgtccgctaggccctaattgcccagatgctcatcctaaacactctgaacct
ccgcatcctcctcaaaagcggaaagactggtaa
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