Schizosaccharomyces pombe (fission yeast): 2541567
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Entry
2541567 CDS
T00076
Symbol
dia4, SPOM_SPAC25B8.06C
Name
(RefSeq) serine--tRNA (Ser) ligase
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
2541567 (dia4)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
spo01007
]
2541567 (dia4)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spo03016
]
2541567 (dia4)
Enzymes [BR:
spo01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
2541567 (dia4)
Amino acid related enzymes [BR:
spo01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
2541567 (dia4)
Transfer RNA biogenesis [BR:
spo03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
2541567 (dia4)
Prokaryotic type
2541567 (dia4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
DUF6381
Porin_1
EntA_Immun
Motif
Other DBs
NCBI-GeneID:
2541567
NCBI-ProteinID:
NP_594466
PomBase:
SPAC25B8.06c
SPAC25B8.06c.1
UniProt:
Q9UTB2
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Position
I:complement(join(4164278..4164599,4164657..4165774))
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AA seq
479 aa
AA seq
DB search
MRLTNRRFSTFLGNALPSKKKGFIFMSQLLYLRTFSTHTSYLRSSWQAILNYKYIYQNAE
AVQRNCINRNLQAIAETVPKIRSLIDEKESLKNEFFPLLSLKKEITLQIERCSDPNERGK
LVNEAKGLKKKTEEYNKIISKVTNDLYQYCLAVPNTTLPTVPVGPEDKAVVVQKIGSPLV
KKTGSLKDHLQIANEGINLEDAAQASGHSFCYTTGDIALLEMAITNYAMDFAISKGWCPV
IPPTIVRTDIALACGFQPRDEEGQQIYELDSYTSPLVSSPKQCLIGTAEISLAALGFKKT
FNNFTERKVVGVSRAYRREAGARGKENRGLYRLHEFTKVELFAWTHPSRSSEMFNEIVNF
QKEFVETLKIPARILNMPTAELGSSASQKYDIEAWMPARQSYGEITSASNCLEYQARRLL
TRYRNDKDSGFVHTLNGTAAAIPRLIIAILENHQQEDGTVKVPETLVPYIHKEYLFKAK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcgattgactaatcgtcggttttccactttcctgggaaatgccctcccgtccaagaaa
aaaggcttcatatttatgagtcaattgttgtatttaaggacattttctacgcacactagt
tatttaagaagttcttggcaggcgattttgaattacaagtacatctatcagaatgctgaa
gcagtacaaagaaattgtattaatcgaaatttgcaagctatagcagagacagttcccaaa
atcagatcactaattgatgaaaaggaatcattaaagaatgaattttttcccttactctct
ctaaaaaaggagattactctccaaattgaacgatgtagtgatccgaatgaaagagggaaa
ctagttaatgaagctaagggtttaaaaaagaaaacggaagagtataacaaaattatttca
aaggttaccaatgatttataccagtattgtctggcagttccgaatactactttgccaacg
gtacctgtgggtcctgaagataaggccgttgttgtacaaaaaataggtagtcctttagtg
aaaaaaacgggttctttgaaggatcatttacagattgcaaatgaagggatcaacctagaa
gatgctgctcaagcgagtggtcattcgttttgctatacaacgggtgacattgctctgtta
gaaatggctataacaaactatgcaatggattttgctatatcaaaaggatggtgtcctgtc
attcctcctacgattgtccgcaccgatatagctctagcttgtgggtttcaacctcgtgat
gaagaaggtcagcagatttacgagttagattcctatacttccccccttgtaagctctcct
aaacagtgccttattgggactgcggaaattagtcttgcagctcttggatttaagaaaacg
tttaataatttcaccgaacggaaagttgttggagtttctcgtgcctatcgaagagaagcg
ggagctcgtggaaaagaaaacagaggtttataccgtttacacgagttcacaaaagttgaa
ttattcgcttggactcatccatcaaggagttctgaaatgttcaatgagattgttaatttt
caaaaagagtttgtagaaactttaaaaatacccgcaagaattttgaatatgccaactgcg
gaattgggatcttcggcctctcaaaaatatgacatcgaagcgtggatgccagcgcgacaa
tcatacggggagataacttcagcatctaattgtcttgaataccaagctaggcgtctactc
acacgatatcgaaatgacaaagactcgggttttgttcacacactgaacggcacagcagct
gccatccctaggttaataatagctatccttgaaaatcaccaacaagaggatggcactgtt
aaagttccggaaacccttgtcccttacatacacaaggaatacctttttaaagcaaaataa
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