Schizosaccharomyces pombe (fission yeast): 2541587
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Entry
2541587 CDS
T00076
Symbol
smc5, SPOM_SPAC14C4.02C
Name
(RefSeq) Smc5-6 complex SMC P-loop ATPase subunit Smc5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spo03400
]
2541587 (smc5)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
2541587 (smc5)
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Ortholog
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GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_29
FlaC_arch
AAA_27
AAA
AAA_21
ABC_tran
Motif
Other DBs
NCBI-GeneID:
2541587
NCBI-ProteinID:
NP_594907
PomBase:
SPAC14C4.02c
SPAC14C4.02c.1
UniProt:
O13710
Structure
PDB
PDBj
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All DBs
Position
I:complement(join(5226406..5229417,5229467..5229632,5229701..5229753))
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AA seq
1076 aa
AA seq
DB search
MDGLRPSKRRKSNPLYSDYALGSIVRIKLVNFVTYDYCELFPGPYLNLIIGPNGTGKSTI
VSAICIGLGWPPKLLGRAKEAREFIKYGKNTATIEIEMKYRDDETVTITRQISQDKSSSF
SINREACATSSITSLMDTFNVQLNNLCHFLPQDRVAEFAQLDPYSRLMETERAIDHEGLL
PAHEKLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKEREKIKSYIEMLGLA
KMLVIYREKTNVFNQLRADKKKLKKDLKDLVEEFQPILDKGEELRSDLKLKDDTFNDYSS
ASMELNTSNLRARASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGP
RPSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLDNIKRELSYYN
DATKRKLDFMSSAPGWEDAYQTYQLLKEYESAFEAPAYGPIYMNLKCKEKGFAALIEGFF
RTDTFRTFIMSNYNDYLKLMDLITSKTKYTPTIREFSSERKKKIEDFEPPCSREKLQSFG
FDGYVIDFLEGPEVVLVALCHMLKIHQIPIAKRELPPASVNALNNFRLANGDPVLKTYLA
GSSIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVKRKEEQLNAQLSQLENLQNE
ERKLQEKVNEHESLLSRTNDILSTLRKERDEKLIPIHEWQQLQERIEHQTLLLRQREKVP
EQFAAEIEKNEDIRKENFEALMNSVLKVKENSIKATNNFEKMLGSRLNVIEAKYKLEKHE
MDANQVNARLTEVQDRLKDITDKLASAREDAMSLYGSVVDSLQTQSSDRQTAITELNEEF
ATSSEVDNKISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVEELQDEMNS
IKEDWVSKLEENVQCISDRFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFREEEGLQK
LTGQRQSGGERSVSTIMYLLSLQGLAIAPFRIVDEINQGMDPRNERVVHRHIVNSVCDNA
VSQYFLVTPKLLPDLTYHRNLKVLCICNGAWLPATFRTSLSTYFEKLKKSALISSS
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggatggccttaggccttcgaaacgaagaaaaagtaatcctttgtattcagattacgcg
ttaggaagtattgtacgaattaaattagtgaactttgttacatacgattattgtgaactg
ttccctggtccatatctaaatttgattatcggtccaaatgggacaggtaagagcacaatt
gtttcagcaatatgcattgggctgggatggcccccaaaactacttgggagagctaaagag
gcccgtgaatttataaagtatggcaaaaacactgcaaccatagaaattgaaatgaagtat
cgtgacgatgaaacggttactatcacgagacaaataagccaggataagagtagttctttc
tctattaatagggaagcatgtgccacttcttcaataacgtctctaatggatactttcaat
gtacaattgaataatctttgtcattttttaccacaagaccgtgttgcagaattcgctcag
cttgatccttattctagactgatggaaactgagcgtgcaattgaccatgaagggttactt
cccgcacatgagaagcttattgatttacgaaaacgagaaagggaaattttacaaaataaa
aaccaaggacaatcaacattaaattcattaaaagatagacaacaggcactagagaaggaa
gtcaatatatttaaagaacgggaaaaaatcaaatcatacatcgaaatgctagggttagct
aaaatgttagttatatacagagagaaaaccaatgtctttaaccaacttcgtgcagacaaa
aaaaaattaaaaaaggatttgaaagacctagtggaagaatttcaacctattttggataaa
ggtgaagagctgcgttcggatttaaaactaaaagatgatacatttaacgattactcctcc
gcttcgatggaacttaatacctcaaatttaagagccagagcttctttttcgaatttcatg
gagaacgagaaaaagctttatgagaaggttaataccaatcgaacacttttacggaatgca
aatcttacattaaatgaagcacaacaatcggtgaagtcattaacagaaagacaaggccca
agaccttcggataacggtgttcaagatctacaagaaaagatgcaagaagttaatgcggaa
aaacttcaacatgaaaacgagaaacttgagagctctcatgaactaggtagtatcagaaca
ttgaaagcacaaaagcttattgaccttgataacattaaaagagagttgtcctactacaac
gatgctacgaaaaggaaactagactttatgtcttctgctccaggctgggaagatgcttat
cagacgtatcagttattgaaggaatacgaatctgcgtttgaagcacccgcatacggccca
atttatatgaatttgaaatgtaaggaaaaagggtttgcagctttgatagaagggtttttt
cgcacggatacgtttcgaacatttataatgtcaaattataatgattatctaaagttaatg
gatcttatcacttcaaaaactaagtacactcctactataagagaattctccagtgaacga
aaaaagaagatagaagattttgaacctccatgctctcgtgagaagcttcagtctttcggg
tttgacggatatgtgatcgattttttagaggggccagaagtggttttggttgctttgtgc
catatgttaaaaattcatcaaattccgattgcaaaaagggaactacctcccgcatcagtg
aatgcgttaaacaattttcgtctggctaacggggatccagttcttaaaacttacttggcg
ggctcatctatccacttggtttttcgttcagcttacggtgatagagaaattactaggcga
acagacccattaccttctcgcagtatatatttttccgagaacgttgagatggatttggta
aagcgaaaggaggagcaactaaatgctcaactctctcaattggaaaatttacagaatgag
gaaagaaagttacaagaaaaggtaaatgagcacgaatcgctgctttctcgtacaaacgat
atattatctactctacgaaaagagcgtgacgaaaaattaattcctattcacgaatggcaa
caattacaagaaagaatagaacaccaaactcttctactaagacaaagagagaaagttcct
gagcaatttgcagctgaaattgaaaaaaatgaagatatcaggaaagagaacttcgaagct
cttatgaattcggtgttaaaagttaaggagaattcaattaaagctacgaataatttcgag
aagatgttgggaagtagacttaatgtcatagaagcgaaatacaaacttgaaaaacacgag
atggatgccaaccaagtcaacgctcgattgacagaagtacaagatcgtcttaaagatatt
accgataagttagcctcagcaagggaggatgctatgtccttgtacggttcagtggttgat
tcattgcagacacaatcatctgacagacaaacggcaataactgaattaaatgaagaattt
gctactagttcggaagtggataacaaaattagcatcgaagaaacgaaactgaagtttatg
aatgttaatagttacgttatggaacaatatgatgcgcgtaaaaaagaaattgaggaacta
gaatcgaaaatgtcagactttgatcaatccgttgaagagctccaagacgagatgaactca
atcaaagaggattgggttagtaagttagaggagaatgttcaatgtattagcgatagattt
tctaaaggaatgagtggaatgggatatgctggagaagttcgactagggaaatccgacgat
tatgataaatggtatatcgatattttagtacaatttcgagaggaagaaggacttcaaaaa
cttacgggtcaacgacaatctggtggagaacgttctgtatctactataatgtatttatta
tctttacaaggtttggcaattgctccgtttcgaatagttgatgaaataaatcaaggaatg
gatcctcgaaatgaacgagttgtgcataggcatatcgtcaattcagtgtgtgacaacgct
gtttcacaatacttcttagtcactccaaagttattaccagatttgacataccatcgaaat
ttgaaagtgctatgtatttgtaatggtgcttggttaccagcaacttttagaacatccctt
tctacctattttgaaaagttaaagaagtccgcactcatttcttcgtcataa
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