Schizosaccharomyces pombe (fission yeast): 2541619
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Entry
2541619 CDS
T00076
Symbol
prp10, SPOM_SPAC27F1.09C
Name
(RefSeq) U2 snRNP-associated protein SF3B1
KO
K12828
splicing factor 3B subunit 1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2541619 (prp10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spo03041
]
2541619 (prp10)
03036 Chromosome and associated proteins [BR:
spo03036
]
2541619 (prp10)
Spliceosome [BR:
spo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
2541619 (prp10)
Complex B
2541619 (prp10)
Complex C
U2 SnRNP specific factors
2541619 (prp10)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
2541619 (prp10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PPP2R1A-like_HEAT
HEAT_EZ
TOR1L1_N
HEAT
HEAT_EF3_N
HEAT_2
SF3b1
Htt_N-HEAT_1
mTOR_dom
Vac14_Fab1_bd
XMAP215_CLASP_TOG
RRP12_HEAT
UTP20
HEAT_ECM29
DUF5742
UTP20_N
HEAT_Maestro
CRM1_C
Motif
Other DBs
NCBI-GeneID:
2541619
NCBI-ProteinID:
NP_594538
UniProt:
Q10178
LinkDB
All DBs
Position
I:complement(join(4333170..4336555,4336622..4336726,4336778..4336787))
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AA seq
1166 aa
AA seq
DB search
MSTVEDVEIERLRAERELLRRQKEAAKNSSTNGSVNIEEYDSAIDVRNDISQDEDDYKRT
NDVNDSYRLVRQYEAPKELLNEYADESYDPMQERQSKKQIQDRESDYQKQRYDRQLTPTR
VDAFQPDGTQSNGRSYAEVMRQVELEKEERRVHMELNQRRREGTLKEVEEEESISDKKRE
LELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAPENFTISEHVIENGISEDLIN
KEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGYLESIHPELLQKGTTLDTYHV
PQEQELPLEKELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTIAELRERKIL
RLLLKVKNGTPPMRKSALRQLTDQARDFGAAALFNQILPLLMERTLEDQERHLLVKVIDR
ILYKLDDLVRPFTHKILVVIEPLLIDEDYYARAEGREIISNLAKASGLAHMIATMRPDID
HVDEYVRNTTARAFSVVASALGVPALLPFLKAVCRSKKSWQARHTGVRIIQQIALLLGCS
ILPHLKNLVDCIGHGLEDEQQKVRIMTALSLSALAEAATPYGIEAFDSVLKPLWSGVQRH
RGKSLAAFLKATGFIIPLMEPEYASHFTRRIMKILLREFNSPDEEMKKIVLKVVSQCAST
DGVTPEYLRTDVLPEFFHCFWSRRMASDRRSYKQVVETTVVLAQQVGSRQIVERVVNNFK
DESEPYRKMTAETVDKVIGSLGVSEIDERLEELLLDGVLFAFQEQSVEEKVILTCFSTVV
NALGTRCKPYLPQIVSTILYRLNNKSANVREQAADLVSSITIVLKACGEEALMRKLGVVL
YEYLGEEYPEVLGSILGAIKAIVSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTIDL
VGKIADRGSEYVSAREWMRICFELIDMLKAHKKSIRRAAVNTFGYISKAIGPQDVLATLL
NNLKVQERQNRVCTTVAIAIVAETCMPFTVVPALMADYRTPEMNVQNGVLKSLAFMFEYI
GEQARDYVYAITPLLADALMDRDAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPN
ILEESPHVINAVREGIDGIRNCIGVGPIMAYLVQGLFHPSRKVRNTYWTSYNSAYVQSAD
AMVPYYPHVDDDQFNNYDMKTLHICI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactgtagaagatgtggaaatagaaaggcttcgtgctgaaagagaacttttgcga
agacaaaaagaggcagcgaagaattcgtcgacaaatggaagtgtaaatattgaagaatat
gactccgcaattgacgtgcgcaatgatatctctcaggatgaagacgattataaacgtaca
aacgatgttaatgatagttatcgtttagtgcgtcaatatgaagcacctaaggaactacta
aatgaatacgctgatgaaagttatgaccctatgcaagagagacagtcaaaaaagcaaatt
caggatcgcgagtcagattatcaaaagcagcgttatgatagacagcttactccaacccgc
gtagatgcttttcaacctgatgggacacagagcaatggaagatcttatgcggaggttatg
cggcaggttgaattagaaaaggaagagcgacgagttcatatggaattaaatcaaagacgt
cgtgaaggaacactaaaagaggtggaggaggaggaaagcatatcggacaaaaaaagagaa
ctagagcttaataatacggaaatatctcagaagcctaaacgctctcgttgggatcaggct
ccacctagcgttacgcaggtttccactactaagcgtagatcacgttgggacaaagctcct
gaaaacttcactatatctgaacatgttatagaaaacggaatttctgaagatcttattaat
aaggaagtaaatgtagtagaagaaaaattacgacctcctgtccgtttattaactgaagaa
gagttaaatgagcttttgccgtcagaaggctatgctattttggagcctcctcctggatat
ttagaatcaattcatcctgaactacttcaaaaaggtactacgctcgatacatatcacgtt
ccacaagagcaagagcttcctttagaaaaagaattaccagctgcattgcctacagaaata
cccggtgtaggtgatttagctttttttaagcaagaagatgttaaatattttggcaagtta
ctcaaggtggaggacgaggccaagcttacaattgcggaacttcgtgaacgtaaaattttg
agattacttctgaaagtaaaaaatggtactcctcccatgcgtaagagtgcattacgccag
cttacggatcaagctcgcgactttggtgcagctgctttatttaatcagattcttccgttg
ttaatggaacgaacactggaagatcaggagcgccatcttttagttaaggttattgatcgt
atattatacaaattggatgatctggttcgcccttttactcataaaattctcgtagttatt
gaaccccttcttattgatgaagattactatgcacgtgctgaaggtcgggaaatcattagt
aacttagctaaagcttccggcttggctcatatgattgctacaatgagacctgacattgat
catgtcgacgaatatgtccgaaacaccacagcccgtgccttttcggttgttgcctctgca
ctaggcgtgccggctcttttaccttttttaaaagctgtttgtagaagtaagaaatcatgg
caagccaggcatactggcgttcggattattcaacagattgctctgttattaggatgctct
attttaccacacttaaaaaatttagttgattgtattggtcacggccttgaagatgaacaa
caaaaagtacgaattatgacagctttgtccttatcggctttagctgaagctgctactcct
tacggtattgaagcttttgacagcgttttaaagccattatggtcaggagtccaaaggcat
cgtggtaaaagcttagccgcctttttaaaagcaaccggttttattatccctcttatggaa
cctgagtatgcaagtcattttacacggcgtatcatgaaaattcttctacgtgaatttaat
tcaccagacgaagaaatgaaaaagatagttctcaaagttgtatcacaatgtgcatctact
gatggagtaacacctgagtatttgagaactgatgtgttgcctgaattttttcactgtttt
tggtcccgaaggatggcatcagatcgtcgcagctacaagcaagttgttgaaactacagtt
gttcttgctcaacaagtaggttcccgtcaaattgttgaaagggtcgtcaacaactttaaa
gatgaatccgagccatatcggaagatgaccgctgaaactgtcgataaagtgattggctct
ttaggtgtttccgagattgacgaaagattggaagagctactgttggatggtgttttattt
gcttttcaggagcaatccgttgaggagaaagttattttaacttgctttagtactgttgtt
aatgctcttggtacaagatgtaagccgtatcttcctcagatcgtttctactatattgtat
cgtttaaacaataagtctgctaatgtccgcgaacaagctgccgacttagtttccagtata
accattgttttaaaggcatgtggtgaagaagcattaatgcgtaaacttggtgttgttttg
tacgagtatcttggtgaagaatatccagaggttctgggctcaattcttggtgctattaaa
gctattgtttccgttgttggtatgtcttcaatgcaacctcctattcgtgatttgttacca
agattgactcccatcttgaggaaccgtcatgaaaaggtccaagagaatacaattgatctc
gttggcaaaattgcagatcgtggatcggaatacgtgtccgctagggaatggatgcgtatt
tgttttgaattaattgatatgcttaaagcacataaaaagagtattcgccgtgctgctgtc
aacacatttggttatatatcaaaagccatcggacctcaagacgtgctggctactttgtta
aataatctcaaagtccaggaacgccaaaatcgtgtatgtactactgtagctattgctatc
gtggcagaaacatgtatgccttttacagtcgtaccagcacttatggcagactacagaact
ccagaaatgaacgtgcagaatggtgttttaaagtcattagcgtttatgtttgaatacatt
ggtgagcaagcacgcgactatgtttatgccattacacctcttttagccgatgcgcttatg
gatcgcgatgccgtgcatcggcaaaccgccgcttctgtaatcaagcacttgtctcttggt
tgtgttggtttgggtgttgaagacgcaatgattcatttacttaatatcctatggccaaat
atcttggaggaatcgccccatgttatcaatgccgttcgggaaggcattgatggcatccga
aattgtatcggtgtaggtccaattatggcatatttagtacaaggattatttcatccgagt
cgtaaagttcgtaacacttattggacaagctacaattctgcttatgtacaaagtgcagat
gctatggtaccatactatccccacgttgatgacgatcaattcaacaactacgatatgaaa
actttacatatttgcatctaa
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integrated database retrieval system
