Schizosaccharomyces pombe (fission yeast): 2541635
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Entry
2541635 CDS
T00076
Symbol
rad50, SPOM_SPAC1556.01C
Name
(RefSeq) DNA repair protein Rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03440
Homologous recombination
spo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
2541635 (rad50)
03450 Non-homologous end-joining
2541635 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spo03032
]
2541635 (rad50)
03400 DNA repair and recombination proteins [BR:
spo03400
]
2541635 (rad50)
DNA replication proteins [BR:
spo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
2541635 (rad50)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
2541635 (rad50)
BRCA1-C complex
2541635 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
2541635 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
Mis12
AAA_29
OVT1
BLOC1_2
AAA_16
Endonuclease_7
ABC_tran
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
2541635
NCBI-ProteinID:
NP_001342968
PomBase:
SPAC1556.01c
SPAC1556.01c.1
LinkDB
All DBs
Position
I:complement(join(3791831..3791851,3791891..3792229,3792267..3795557,3795601..3795684,3795734..3795856))
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AA seq
1285 aa
AA seq
DB search
MSCIDRMSIMGIRSFDNRSRESIQFFSPLTLIVGQNGSGKTTIIECLKYATTGILPPNTK
GGAFIHDPKICGEKEVLAQVKLAFRNTNQVKMICTRSLQLSVKKTTRQQKTLDGQLLILK
DNERTTISNRCAELDSQVPLSLGVSKALLDYVIFCHQEESFWPLSEPANLKKRFDEIFES
LRYAKALDQIKGLKRDQETQVKVDQATLTHYRSDKERAEKIELRVHESLKRISCIRSKVE
ELDQEITETARLQDELFKSTEEYEQQMITIRHLESQSDIINTTINDLKSQMTITDESSED
LEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLEKL
KVKKSTMINEIVHRYNINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRARIEG
IKAHEMFLNNRVSEINSSLEKQLTTQKELRSRFEILFPVKLQREDFTKDVEKSDLWIKSL
RQEYESKNLLELLDKHQTALSSVENRLDEISEIVDSYHKYSGVRTKLQVFEENKTNKSAI
LANQLMTLKSSFSEVMSYELKDDDNYNEELDKLVEDVRKKLQEKEEAESSLRSVRERLEI
RISLSVQSINDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEENRKTLHSLQFGSTF
YEKAIEICVDQHACQLCQRSLDKEEEKLFVEHCHSMIDVIPSKSAEVYSHLETLTKTFKN
LSEAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQSELDTLYLRRANLEKLQ
LLVKDISNLEEEIRTIDRETEVLRIELPSSIAHHNLDEIYAEREKLLEKRGYLRKQIERT
KLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSEDCDLQKKKLLEVS
SKQGSQAPFLNELESEYEKLEADIQEMAQKSRTEILEANEYLHQLNEWNSELRIDVSTKF
KCIKEKKSNIGEEVRIIASKIESTDDNLRKLQERLADLRTRERNASDNLRLRALMRQLEE
AVTQKNYLLSQQSHDDRESFRERMQILKSKYGALNAERAGLLGECKQLENSITKDKEELN
MEFKDADERFRRQLIKTKTTGKANEDLGKYAKALDVAIMQLHSMKMNEINRIVDELWKQT
YCGTDIDTILIRSDSEGKGNRTYNYRVCMVKGDAELDMRGRCSAGQKVLACIIIRLALAE
CLGVNCGILALDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHDEQFIRLVNS
DAYCSYYYRVKRDTNQKSMIVKEPL
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgcattgacagaatgtccatcatgggcatacggtcgtttgacaatcgttcacga
gaaagcattcaatttttctccccattaacgctaatagtaggacaaaatgggtctggaaag
actacaataattgaatgcttaaagtacgcaacaacaggaatactccccccaaatacaaaa
ggtggagccttcattcatgatccaaaaatatgcggtgaaaaagaggtccttgctcaggtc
aaattggcgtttcgaaatacgaaccaagttaagatgatctgtaccagatcattacaatta
tctgttaaaaaaactactcgacaacagaaaaccttggacggacaattgctaatattgaaa
gacaatgaaagaactacaattagcaatcgttgtgccgaattagattctcaagtaccgctc
agcttgggtgtgagtaaagctttattagactatgtcattttttgtcatcaggaagagagc
ttctggccattaagtgagcctgctaatttaaaaaaaaggtttgatgagatatttgaatca
ttgcgatatgcaaaggctctggatcaaataaagggtttaaagcgcgaccaggaaactcaa
gtgaaggtcgatcaagcgacattgacacattaccgctcagacaaagaaagagccgagaaa
attgaattgagggtacatgaatctttgaagcgtatatcctgtatccgatctaaagtcgaa
gagcttgaccaagagataactgaaacggctaggctacaagatgagcttttcaaatccact
gaagaatatgaacaacaaatgattacaatcagacatttggaaagtcaaagtgacattatt
aatactactatcaacgaccttaaaagtcaaatgactataactgacgaaagttctgaagat
ttggagaaacttcattcgaattttgctgaaaaggttaaagaggaacaggaactttacaaa
tctttagagaagaagcgttctgatttagaaagtctcctcaaatcaagaagggaactcctt
gaaaaactcactggagatttgggtaaaatccaaggagagatagaaagcttggagaaattg
aaggtaaaaaaatcgactatgattaacgaaattgttcatcgctacaatattaatgaaata
aatgaagaagggatcatgacagaggtgtctaaatacgctagccttgtaaataaaaattat
gagatttccagtggtaaactaaaagagcgacaggtggccgtgagagcacgcatcgaagga
attaaagctcacgagatgttccttaataatcgtgtttcggaaatcaactcttcacttgaa
aaacaactcacaactcaaaaagaattgcgctcacgctttgaaatcctttttcctgtaaag
ttacagcgagaagattttactaaagatgttgaaaaatcggatttgtggattaaatcattg
cgtcaagagtatgaaagtaaaaatttgctggagttacttgacaaacatcaaacagctctg
tcttcagttgaaaaccgtttagatgaaatttcagaaatcgtcgattcataccataaatac
tctggagttcgtaccaagttacaagttttcgaagagaataaaaccaataaatctgctata
ctggctaaccaactgatgacattgaaaagttcgttttcagaagttatgtcttacgaatta
aaggatgatgataattacaatgaagaattggataaactagtcgaagatgtacgtaaaaag
ttacaagaaaaagaagaggccgaatcatcacttcggtccgtcagggaaagacttgaaatt
agaatttcgttatctgtacaaagtattaatgatttaaccgagaataagaagataaaaact
aaaactttgaaatcttatagtgggaccttcgcttctatgatatctgaaattaaagctttg
gaaagtgaaatagaagaaaataggaaaacccttcactcattgcaatttggatctacattt
tatgagaaagctatagaaatatgtgttgaccaacatgcttgtcaactatgtcaaagaagc
ctcgataaagaagaggaaaagctctttgtggaacactgtcactccatgattgacgttata
ccatccaaatctgctgaagtttatagtcaccttgaaacccttactaaaacttttaaaaat
ctttctgaagctaaaccgattttcgatgagattgaactgcttgataaaaggctttcagag
acgaaaactgaactttcagatttgcaaggtgatctacaaggtttggatatacgtaaggac
gaaattcaatcagaattggataccttgtatttaagaagagcaaacttagagaaattacaa
ttgttggttaaagacatttctaatttagaggaagaaattcgtacaattgacagagaaact
gaagttttacgtattgaacttccttcttctattgctcatcataatttagacgaaatttat
gctgagagagaaaaattactcgagaagaggggatacttaaggaaacaaatagaaagaact
aaattggaggaaacttcttttaaaaagaaaatagacgatgctgtcttagccaataacgag
cagaaactaaaacttaccaagttgaattttcaggtcaatgaattggaacaactcgaaaaa
gatattaacaaatcctccgaagactgtgaccttcaaaagaaaaagcttttggaagttagc
tctaaacaaggttctcaggcaccctttttaaacgaattagagtcagagtatgaaaaatta
gaagcagatattcaagaaatggctcaaaaaagtcggacagaaatccttgaagctaatgaa
tacttgcatcaacttaatgaatggaactctgaattgaggattgacgtttccacaaagttt
aaatgcataaaagagaagaaaagtaatattggagaagaagttaggattattgcttctaaa
attgaaagtactgatgataatttaagaaagttacaggagcgcttagcggatttgcgcacg
agggaaaggaacgcatctgataatctacgccttcgcgctttaatgagacaattagaagaa
gccgtgacgcaaaagaattatttgttatcccagcaatcacatgatgatcgggaatcattt
cgcgaacgaatgcaaattttaaagtcaaaatacggggcactcaacgctgagcgcgcaggc
ttattaggagaatgtaagcaattggagaactccattactaaagacaaggaagaacttaat
atggagtttaaagatgcggacgaaagatttcgacgacagcttataaaaacaaagactacg
ggtaaagcaaatgaggatttgggcaagtatgcgaaagctcttgatgtcgctatcatgcaa
ctacattcaatgaaaatgaatgagatcaatcgaatagtagacgaactttggaaacaaacc
tactgtggaactgacattgataccattttaattcgctctgatagtgaaggtaaagggaat
aggacttacaattatagagtctgtatggttaaaggtgatgccgagctagatatgcgaggc
cgctgcagtgctggtcaaaaggttttagcgtgtattattataaggttggctttggcagaa
tgtctaggtgtaaactgtggaattttggctctggatgagccaactacaaatctcgatgaa
gagaatatatgtagtttggctaagaatttatctcggattgtcgaatttagaaggaaacaa
gcaaacttccaactcattgttattacgcatgatgaacaatttatccggttagttaattca
gatgcttattgtagctattattatagggtgaaacgggacacgaatcagaagagcatgatt
gttaaagaacctctttaa
DBGET
integrated database retrieval system
