Schizosaccharomyces pombe (fission yeast): 2541657
Help
Entry
2541657 CDS
T00076
Symbol
slx1, SPOM_SPAP27G11.15
Name
(RefSeq) structure-specific endonuclease catalytic subunit Slx1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
2541657 (slx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spo03400
]
2541657 (slx1)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
2541657 (slx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
MGC-24
T5orf172
DUF2039
Motif
Other DBs
NCBI-GeneID:
2541657
NCBI-ProteinID:
NP_593420
PomBase:
SPAP27G11.15
SPAP27G11.15.1
UniProt:
Q9P7M3
Structure
PDB
PDBj
LinkDB
All DBs
Position
I:join(1638643..1638741,1638783..1639499)
Genome browser
AA seq
271 aa
AA seq
DB search
MDLCNFYCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCL
VYGFPNKVSALKFEWNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHLVDSDTWRRWPL
NITFLNKTAFSKWNQLGKTYGNINVYFDEEWLNGFHEKVIQKTYDHKLCLRKTISEPVKC
NLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWREF
LSTVFTTSLETDERDFESENRIEIIDLELEK
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atggatttgtgcaatttctactgctgttatttactaaagtcgaataggacacaatcaagt
ggagctgtttatatcggttccacaccagatccacctagacgattgcggcaacataatggg
gaaatagttggtggtgcatcaaaaactaaacacgggcgcccttggtcgatttcatgttta
gtttacggctttcctaacaaagtgtctgctttaaagttcgaatggaattggcaaaatctg
ggaatctcgaggtacactaaagattgtgatttccgttcaaaaaaacaaaaaaccattatg
tattgtcttaaaggtttaaagcatttggttgacagtgatacgtggagaagatggccatta
aacatcacatttctaaataaaactgctttcagtaaatggaatcaacttggtaaaacttat
ggtaatatcaatgtatacttcgacgaagaatggttaaatgggtttcacgaaaaagtaatc
caaaaaacttacgatcataaattatgtttaagaaagacaatatcagagcctgttaagtgt
aacctatgctacgaatgtatcgaatctgatgaattgcgggctaattgcccttttacggat
tgcaattcaataaatcatttaacttgccttgcaagcagttttctgacagaagaatgccag
gttcttccaatcgaaggaatgtgtacaaaatgcaaaagagtattgagatggagagagttc
ctgtctacggttttcactacttctttagaaactgacgaacgagattttgaaagcgaaaat
agaatagaaatcatagatctagaactagaaaaatag
DBGET
integrated database retrieval system
