Schizosaccharomyces pombe (fission yeast): 2541849
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Entry
2541849 CDS
T00076
Symbol
cdc17, SPOM_SPAC20G8.01
Name
(RefSeq) ATP-dependent DNA replication ligase Cdc17
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03030
DNA replication
spo03410
Base excision repair
spo03420
Nucleotide excision repair
spo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
2541849 (cdc17)
03410 Base excision repair
2541849 (cdc17)
03420 Nucleotide excision repair
2541849 (cdc17)
03430 Mismatch repair
2541849 (cdc17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spo03032
]
2541849 (cdc17)
03400 DNA repair and recombination proteins [BR:
spo03400
]
2541849 (cdc17)
Enzymes [BR:
spo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
2541849 (cdc17)
6.5.1.6 DNA ligase (ATP or NAD+)
2541849 (cdc17)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
2541849 (cdc17)
DNA replication proteins [BR:
spo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
2541849 (cdc17)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
2541849 (cdc17)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
2541849 (cdc17)
NER (nucleotide excision repair)
Other NER factors
2541849 (cdc17)
MMR (mismatch excision repair)
Other MMR factors
2541849 (cdc17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
2541849
NCBI-ProteinID:
NP_593318
PomBase:
SPAC20G8.01
SPAC20G8.01.1
UniProt:
P12000
LinkDB
All DBs
Position
I:join(1387944..1388026,1388067..1388574,1388637..1390352)
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AA seq
768 aa
AA seq
DB search
MRTVFSQIPRFKQVNQYIRMSTRQSDISNFFISSASHKSEHVEVSQSSSDSKNVDGRSTS
EKRKVESVKLVDESKHNNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSG
ASTPIPLPIKEPPLESNARNDKLKGHATFAEMVKAFTKIENTSKRLEIIDIMGTYFFGIL
RDHPSDLLACVYLSINKLGPDYSGLELGIGESIIMKAIGESTGQTLQQIKLSFHKVGDLG
LVAQTSRQNQPTMFKPAALTIPFLFDSLKKIAQMSGNQSQNRKIGVIKRLLSSCEGAEPK
YLIRALEGKLRLQLAEKTILVALANATAQYHADKNGEKLSQQDRIEGEQILRDVYCQLPS
YDLIVPHLIEHGLGTLRETCKLTPGIPTKPMLAKPTKQISEVLNTFDQAAFTCEYKYDGE
RAQVHFTEDGKFYVFSRNSENMSVRYPDISVSVSKWKKPDARSFILDCEAVGWDRDENKI
LPFQKLATRKRKDVKIGDIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMFQPSTGD
FTFAKHSDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLS
GVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYDPDTETVQSICKLGTGFSEEHLETFYNQ
LKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVYKAAIGYVQEDKGIS
LRFPRFIRIREDKSWEDATTSEQVSEFYRSQVAYSQKEKEGSPAAEDY
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacagtattttcgcaaattcctcgttttaaacaagtcaatcagtacatacggatg
tcgacaaggcagtcagacattagcaacttcttcatttcttctgcttcgcacaaaagcgag
cacgtggaggtttctcaatcgtcttctgattccaaaaatgttgatgggagaagcacaagc
gaaaagagaaaggtcgaatcagtgaaattagtcgacgagtcgaaacacaacaaccacgac
gacactggaactcaaaatgttgagcgtgaaaataatattgtgtctgaggcaaaaaagcaa
aagactttaggttcatcctcctcttcttcagatgccgtatctagtaacaacgattctggg
gcatctactccaatacctttgccaatcaaagaaccaccgttagagtccaatgctcgcaat
gataagttaaaaggtcatgcaacatttgctgaaatggtaaaagcattcacaaaaatagag
aatactagcaaacggttggaaatcattgatataatggggacttacttttttggaattctt
cgcgaccatcccagcgatttactggcctgtgtgtatttaagtatcaataagttgggccca
gattactcgggactagagctaggaattggcgaaagcattataatgaaggctattggagag
tctacagggcaaacgcttcaacagattaaactatcgtttcacaaagttggtgatcttggt
cttgtagctcaaacatcccgtcaaaatcaacccactatgtttaaacctgcagcgctgaca
attccatttttatttgactcattaaaaaaaattgctcaaatgagcggaaaccaatcccaa
aatagaaaaattggagtgatcaagcggctattgagttcctgtgaaggtgcagaacctaaa
tatttgattcgagctttggaaggcaagctacgcctccaacttgccgaaaaaaccatttta
gtagcattagcaaatgccaccgctcaatatcatgctgataagaatggagaaaaactttcg
caacaagacaggattgaaggagagcagattcttcgagatgtttactgtcaactgccttca
tacgaccttatcgttcctcacttgattgagcatggacttggtactttgcgtgaaacttgt
aaattaacacctggaatcccaacaaaacccatgctggctaagccgacgaaacaaatttca
gaagttttgaatacgtttgatcaagccgcatttacatgtgaatacaaatacgatggcgag
cgcgcccaagttcattttaccgaagatgggaagttttatgtattttctaggaattctgaa
aacatgtctgttcgctatccggacatctctgtttctgtatcgaagtggaaaaaaccagat
gctcgttcttttattctcgattgcgaagctgtcggttgggaccgtgatgaaaacaaaatt
ttaccttttcaaaaacttgcaacaagaaagaggaaagatgtgaaaattggggacattaag
gtccgagcatgccttttcgcttttgacattttatacctaaatgggcaacctcttttggaa
accccactcaacgagcgtcgaaaactactttactcaatgtttcaaccaagtactggagac
tttacttttgctaaacatagcgatcaaaagtctattgaatccattgaagaattccttgaa
gaatctgtcaaagattcttgtgagggtttaatggtcaaaatgcttgaaggcccggattct
cattatgaaccgtcaaaacgttccaggcattggctaaaagttaaaaaagactatctttct
ggtgttggagattctctggatttgattgtaattggcgcatactacggaaagggtaaacgt
acttctgtttatggtgcctttcttttgggctgctacgatccagataccgaaacagttcaa
tcgatttgcaaactcgggactggtttttcagaggagcatttagaaactttttacaatcaa
cttaaagacattgttatatctaaaaagaaagatttttatgctcatagcgatgtacctgcg
catcagcctgacgtctggtttgagcctaagtacttgtgggaagtcttagctgccgattta
tctttgtctccggtttacaaagctgcaattggatatgttcaagaggacaaaggaatcagt
ttacgttttccaagattcattcgtattcgggaagacaagagctgggaggatgctacaaca
agtgaacaggtttcagaattctatcgttcgcaggtggcttacagtcaaaaggaaaaagaa
gggtccccagctgccgaagattattaa
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integrated database retrieval system
