Schizosaccharomyces pombe (fission yeast): 2541858
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Entry
2541858 CDS
T00076
Symbol
alp13, SPOM_SPAC23H4.12
Name
(RefSeq) Clr6 histone deacetylase complex, chromodomain subunit Alp13/Eaf3
KO
K11339
mortality factor 4-like protein 1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
2541858 (alp13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spo03036
]
2541858 (alp13)
03400 DNA repair and recombination proteins [BR:
spo03400
]
2541858 (alp13)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TIP60 complex
2541858 (alp13)
NuA4 complex
2541858 (alp13)
DNA repair and recombination proteins [BR:
spo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
2541858 (alp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MRG
MSL3_chromo-like
Tudor-knot
Mating_C
Presenilin
Motif
Other DBs
NCBI-GeneID:
2541858
NCBI-ProteinID:
NP_593394
PomBase:
SPAC23H4.12
SPAC23H4.12.1
UniProt:
O13953
Structure
PDB
PDBj
LinkDB
All DBs
Position
I:complement(join(1587489..1587573,1587623..1588551))
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AA seq
337 aa
AA seq
DB search
MAVSYKVNERVLCFHGPLLYEAKIVDTEMKGDVTTYLIHYKGWKNSWDEWVEQDRILQWT
EENLKTQKELKNAAISTRQKPTSKKSASSTSKHDSTGVKTSGKRSRESSTVTVDGDSHEL
PSRIKTQKSESPIPQQVKRDGTTDAKNEETTKPENNEKDDFEEEPPLPKHKISVPDVLKL
WLVDDWENITKNQQLIAIPRNPTVRAAIAAFRESKISHLNNEIDVDVFEQAMAGLVIYFN
KCLGNMLLYRFERQQYLEIRQQYPDTEMCDLYGVEHLIRLFVSLPELIDRTNMDSQSIEC
LLNYIEEFLKYLVLHKDEYFIKEYQNAPPNYRSLVGV
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcatataaggtgaatgaacgtgtactatgctttcacggcccgttactctat
gaggctaaaattgttgatactgaaatgaaaggtgatgttaccacgtacctgattcattat
aaaggatggaaaaacagttgggatgaatgggttgaacaagataggatactacaatggaca
gaagaaaatttaaagactcagaaagagttaaaaaatgccgctatctctacgagacaaaaa
ccgacttctaaaaagtccgcatccagcacttcgaaacatgactcaactggagttaaaaca
tcaggaaagaggtctcgagaatcgagcaccgtaacggttgatggcgattcacatgaattg
ccttcacgtataaaaacccaaaaatcagagtctccaattcctcaacaagtgaaacgcgat
ggaacaaccgatgctaaaaacgaggaaactactaagcccgagaataacgagaaagacgat
tttgaggaagagccaccgcttccaaaacacaagattagtgtcccggacgttctaaagcta
tggcttgttgatgactgggaaaacattaccaaaaatcaacagttaatagctataccgcgg
aatcccaccgtccgggctgctatagcggccttccgagaatccaagatttctcatttgaac
aatgaaatagacgttgatgtttttgaacaagcgatggctggtttggttatatactttaat
aagtgcttgggcaatatgctgctgtatcggtttgaacggcagcaatatttagaaattcgg
cagcaatatcctgatactgaaatgtgtgatttatatggcgtcgaacatttaattcgcttg
tttgtaagccttcctgaattgattgaccggactaatatggattcacaatccatcgagtgt
ttgttgaattacattgaagaattcttgaagtatctcgttctacataaagatgaatatttt
attaaagaatatcaaaacgcccctccaaactatagatctttggttggtgtataa
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integrated database retrieval system
