Schizosaccharomyces pombe (fission yeast): 2541942
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Entry
2541942 CDS
T00076
Symbol
seb1, SPOM_SPAC222.09
Name
(RefSeq) poly(A)site selection protein Seb1
KO
K15560
protein NRD1
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spo03021
]
2541942 (seb1)
Transcription machinery [BR:
spo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
2541942 (seb1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nrd1-Seb1_dom2
CID
RRM_1
RRM_ACIN1
Motif
Other DBs
NCBI-GeneID:
2541942
NCBI-ProteinID:
NP_593148
PomBase:
SPAC222.09
SPAC222.09.1
UniProt:
Q9UTE3
Structure
PDB
PDBj
LinkDB
All DBs
Position
I:join(960061..960417,960608..962113)
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AA seq
620 aa
AA seq
DB search
MSGIAEFDGILDSLEHSKTGISGSKILKLTNLSMENVSENAQFVASVYKYAKRAPVTHKL
GALYILDSIVRSFQDGAKKNNESFENPVDASFSGGWCKAAEITDSLVADAIQHAPSAHLP
KILKLCDIWEKASTFPPEKLESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVGS
QAAAPTSRPVENDAASILEALAAFAQKAPVPSAAEESVSTPPQPAVAPSVSAVVPNLPVH
PATAINAQSQSGNPLSNPLFQPSNVPQSIPSGPMGMKTGSVNDTQSQQITLMNVLASQNV
PPAQIDSIMKAAFPNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRS
PSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDPTIPPDSIKVYSRTLFLGGITRSVREP
VLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFADTTIRTKWGVGFG
PRECSDFSTGISVIPIRLLTDADRTWLVTAEYGGTGGLPITPGIALDEPDIEIGLGISSK
AISKRGKDFAMRRDERFRGRKPYRGGPPIHHGERHFDSGNDWHGNPSTVPPPTNPYNPGY
PYMDPNYSSGYVSQPPWQPQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaatcgctgaattcgatggtattttagattcccttgaacattccaagacagga
atctcgggatcaaaaattttgaaattgactaacttgtcgatggaaaatgtttcagagaat
gcgcaatttgttgctagtgtgtataagtatgcgaagcgtgctcccgtcacccataaatta
ggagctttgtatattctagactcaatcgttcgtagctttcaggacggtgctaaaaagaat
aatgaatcttttgaaaatcccgttgatgcgtcttttagtggcggctggtgcaaagctgct
gaaataactgatagtttggtcgcagatgctatacagcatgcgccatctgctcatttgcct
aaaatattaaagctttgtgatatttgggagaaggcttcaacatttcctcccgagaagcta
gaatcgcttcgttcaaagctgaaagatgcaatggcaagtacggaaccggttagtgtagat
tctgctgctgctccatcacagtctactaatcccgaggggaatggtggttctgttggtagt
caagcagccgcccccacttctcgtcctgtcgaaaacgatgctgcttctattctagaggca
ttggctgctttcgctcaaaaggcgcccgtccctagtgctgccgaagaatcagttagcact
ccaccgcagcctgccgtcgcaccatccgtttctgctgtcgtccctaacctacctgttcat
ccagctaccgccattaatgcacagtctcagtcaggcaatccattatcaaaccctctattc
caaccttcaaatgtaccacagtctattccctctggtcccatggggatgaagacaggatcg
gtcaatgatacccagagtcaacagatcactctcatgaatgtattggcttctcagaatgta
ccacctgcacaaatcgatagcatcatgaaagctgcttttcccaactataacgctccattc
cagccggctggtgtcggcagtgttcctttgccagctcctacctcttcccaatccttaaga
ctcggctccttacatcgttctcgtagccctagtcctcgtagtggtcgccctcgtcgtagc
cctagtccttctcatttatccattccttctactttgcctcctgcagatggtgtgccaaaa
cctacccctgatggatttcctcgccgatttgagcgtgacccaaccattccacctgattct
attaaggtatacagccgtactcttttccttggtggtattactcgttctgtgcgagaacct
gttcttcgatctatgtttgaacgatttgggtctgtacaaagtttaattttaaatcataat
tacagacacgggttcttgaaaatgtttcgtcgtgatgctgcagagaaagctcaagtagcg
atggaaaatgtcccttttgctgatactactattcgtactaaatggggtgtaggatttgga
cctcgagagtgctctgacttttccacaggaatcagcgttatcccaatccgtttgttgacg
gatgccgatcgtacctggcttgtaactgcagaatatggcggcacgggtggccttccgatt
actcctggtatcgctttggatgaacctgatattgaaattggattaggaataagttctaag
gcaattagtaaaagaggaaaagattttgctatgcgtcgtgatgagcgattccggggtcgt
aaaccatataggggaggtccacccattcaccatggtgaaaggcattttgattcaggaaat
gactggcatggtaatcctagtaccgttcctccccctaccaacccatataatcccggctat
ccatatatggatcctaattactcttctgggtatgtctcacaacctccttggcaaccccaa
taa
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