Schizosaccharomyces pombe (fission yeast): 2542173
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Entry
2542173 CDS
T00076
Symbol
mtl1, SPOM_SPAC17H9.02
Name
(RefSeq) exosome RNA helicase subunit Mtl1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2542173 (mtl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2542173 (mtl1)
03041 Spliceosome [BR:
spo03041
]
2542173 (mtl1)
03009 Ribosome biogenesis [BR:
spo03009
]
2542173 (mtl1)
03016 Transfer RNA biogenesis [BR:
spo03016
]
2542173 (mtl1)
Enzymes [BR:
spo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
2542173 (mtl1)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
2542173 (mtl1)
Spliceosome [BR:
spo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
2542173 (mtl1)
Complex C
U4/U6.U5 tri-SnRNP related factors
2542173 (mtl1)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
Pre-60S particles
Helicases
2542173 (mtl1)
Transfer RNA biogenesis [BR:
spo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
2542173 (mtl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
2542173
NCBI-ProteinID:
NP_593572
PomBase:
SPAC17H9.02
SPAC17H9.02.1
UniProt:
O13799
LinkDB
All DBs
Position
I:2004838..2007930
Genome browser
AA seq
1030 aa
AA seq
DB search
MSENSTDSKNFQFSEGSRESSNDELKVLLRDTETKEDEKSSFSNSEEESIIENLSDSSVN
KEYAKNSLKLSDAVSESKYLNPLLKDKRHDRSFALHKVVVPDDYDYIPLNKHIPSDPPAK
TYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSL
SNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEV
HYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPT
PLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLER
IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDR
GLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTV
LFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARCLMNGQA
DVLNSAFHLSYGMILNLMRIEEISPEDILKKSFYQFQNMESLPLIKEELMQLKNEETSIN
IPNETAVKEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIKLGGIIFPWGVLVN
VIKREFDPNTREQVAPHETYVLDVLLPISSNSMSNHKVNPSILVPPRPNETPLYEIVSVL
LTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKEIPYLDPLEHMHIESSTLSLS
LRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKI
RQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFV
YEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQFKPDIMEPVSL
WINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHR
DIIFSASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaacagtacagactctaaaaatttccaattcagtgaaggttcacgcgagtct
agcaatgatgagctcaaagtattgttaagagatacagaaactaaagaggatgagaagtcg
tctttttcaaactctgaagaagagtcgataatcgagaatttgtcggactcttcagtcaat
aaggaatatgctaaaaattccttgaaattgagtgacgcggtttctgagtctaaatacttg
aatccattacttaaagacaaaagacatgataggagcttcgcattacacaaagttgttgtt
cctgatgattacgattacattcctctaaataaacatatccctagtgatcctcctgctaaa
acgtatcctttcgaactagatccttttcaatctactgcaataaagtgtgtggaacgaatg
gaatcagtccttgttagtgcacacacctcggcaggtaaaacggttattgctgaatatgct
attgctcaagcattgaaaaatcgacagagagtaatttatactagtcctataaagtcttta
agtaaccaaaagtatcgagagctactttccgaatttggtgatgttggtttaatgaccggt
gatgtctctattaatccatcagctagttgtcttatcatgactactgaaattctacgtgca
atgctatacaaaaactcagaaatcatgcacgaaattgcctgggttatctttgatgaagtg
cactatatgcgtgataaagatcgaggagttgtatgggaagagactttgattttgttacca
gatgctatacgctttatttttctatctgctactttacctaacgcattacaatttgctcgt
tggatttcagagatccacaagcaaccctgccatgttgtttatacagattaccgacccact
ccactgcaacattttatttaccctcaaggagctgatgggatttatatgttagttgacgag
aaaaacaagtttaaaactgaaaactttaaaaaagtactggaagtgcttgatcattccaca
cgccaggaaaactattccaaaagttccaaaaaggttaagaagtcatcttcattagaaaga
attatcaatatggtcttatccaatagatatgatccaatcattgtattttgctttagtaag
aaagagtgtgaaatcaatgctcaccaatttggaaaactggacttaaatgatacggaaaat
aaagaattagttacagaaattttcgactctgctatcaatcaactttcagaagaagataga
ggcctccgtcaatttgaagaaatgcgttcgcttttacttcgtggcataggtattcatcat
tctggtttgcttcctattttgaaagaattggtcgaaatattatttcaagaaggtcttgtt
agaattttgtttgcaacagaaactttctcaattgggttaaatatgcctgctcgaacagtt
ctgtttacaaaagctcaaaagttttcaggaaacaattttcgatggcttacatctggtgaa
tatatgcaaatgagcggacgtgcaggtagaagaggaattgatactaaaggattatccatt
gtaatattggatcaatccattgatgagcaagctgctcgatgtttgatgaatggtcaagct
gacgttcttaattccgctttccatcttagctatgggatgatattaaatctcatgagaatt
gaggaaatcagtccagaagatatattaaaaaaaagcttttatcagttccaaaatatggaa
tctttacctttaattaaagaagaacttatgcaattaaaaaacgaagagacttcaattaat
attcccaatgagacagctgtcaaggagtttcacgatttaaaattacagttagaaaagtat
ggggaagaaattcaaaaggtaatgacccatcctgataattgtttgccttatctgcaatct
ggccgacttatacaaataaaattagggggtattatatttccttggggtgtacttgtcaat
gtcataaaaagagaatttgatccaaacactcgtgaacaagttgccccgcacgaaacctat
gttcttgatgttttacttcccatctcctcaaactccatgtcaaatcataaagtgaatccc
tcgattttagtaccccctcgtccgaacgagacacctctttatgaaatagtttctgtttta
ctgactgctgtttgtaacatttcttctatacgtatttatatgccacgagagttgaactcg
aatgaatctaagctgcgtgcttatagacgtgtaaatgaggttatagaagaatttaaggaa
ataccttatttagaccccttagaacatatgcatattgaaagctctacgttaagtttatct
cttcgaaaacttgaaattcttgaacccaaactcttcgacagcccttactacaaggattct
aaacatagggccgaatatcatgaatttagaaaaaaactcaacttacgagctcagataaaa
gatatatcgacgaaaattacaaatactgaggcgattatacaacttcgagaacttaaaatt
agacaaagggttttacggcgacttggattctgcaccttagaaaatgttattgatattaaa
ggaagggtagcttgtgaaattacttctggagacgaactgctgttggtggagcttatcttc
caaggtttttttaaccaaatgcctcctgaagaaattgctgctgcactcagttgctttgtt
tatgaagacaaatctgaagtttccacattgaatttgaaagagcctttcaaaaagatgtat
ctaacgattattgaagcagcaaagcgcatagcaaccgtttcgttagaaagtaagcttcaa
tttaacgaaagcgactacctccatcagtttaagcctgacattatggagcctgtatcttta
tggatcaatggagcctcgtttcaagaaatatgcattgtctccaagctttatgaaggttca
attgttcgaacgttcaggagattagatgagttgttaaaacaacttgaacatgctgctatt
gtattaggcaataatgaattgaaagagaagagtgtgttgactgaacaaaagttgcatcgt
gatatcatattttcggcctctctatacctctaa
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